PROJECT INFORMATION
GOLD Project ID
Gp0010090  
Project Name
Mesorhizobium loti CJ3sym  
Other Names
  
Legacy ER Project ID
18928  
Legacy GOLD ID
Gi08828  
NCBI BioProject Name Mesorhizobium loti CJ3sym
NCBI BioProject ID 165305
NCBI BioProject Accession PRJNA165305
NCBI Locus Tag
A3A9  
NCBI BioSample Accession SAMN02441449
PI Nikos Kyrpides
Added By Ionna Pagani on 2011-02-10
Last Modified By Hema Katta on 2019-01-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Root Nodulating Bacteria (RNB)
GEBA-RNB
Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Murdoch University (Australia)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Root Nodulating Bacteria  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study GEBA - Root Nodulating Bacteria
Organism Mesorhizobium loti CJ3sym
Analysis Projects Mesorhizobium loti CJ3sym
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
7563725  
Vector
  
GC Percent
62  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010090
Organism Name
Mesorhizobium loti CJ3sym  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Mesorhizobium  
Genus Synonyms
  
Species
Mesorhizobium loti  
Subspecies
  
Species Synonyms
  
Strain
CJ3sym  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1040982
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Phyllobacteriaceae  
NCBI Genus
Mesorhizobium  
NCBI Species
Mesorhizobium loti  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
5-8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Lotus corniculatus, Lotus japonicus  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Root nodule
Soil
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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