PROJECT INFORMATION
GOLD Project ID
Gp0009915  
Project Name
Methanoregula formicica SMSP, DSM 22288  
Other Names
  
Legacy ER Project ID
1918  
Legacy GOLD ID
Gi08756, Gc02458  
NCBI BioProject Name Methanoregula formicicum SMSP
NCBI BioProject ID 63567
NCBI BioProject Accession PRJNA63567
NCBI Locus Tag
Metfor  
NCBI BioSample Accession SAMN02232038
PI Wen-Tso Liu
Added By Ionna Pagani on 2011-02-07
Last Modified By Nikos Kyrpides on 2014-07-16
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Illinois, Urbana-Champaign (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methanoregula formicicum SMSP genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database DOE
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome sequencing and comparison of novel methanogens from peatlands and bioreactors
Analysis Projects Methanoregula formicica SMSP, DSM 22288
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
55  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0009915
Organism Name
Methanoregula formicica SMSP, DSM 22288  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanoregula  
Genus Synonyms
  
Species
Methanoregula formicica  
Subspecies
  
Species Synonyms
  
Strain
SMSP  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22288  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.20338  
Exemplar Name
Methanoregula formicica DSM 22288  
Taxon DOI
10.1601/tx.20338  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 593750
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanomicrobiales  
NCBI Family
Methanoregulaceae  
NCBI Genus
Methanoregula  
NCBI Species
Methanoregula formicica  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
7.4  
Cell Diameter
0.5um  
Cell Length
1.0?2.6um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sludge
Wastewater
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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