| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0009829
|
|
Project Name
|
Pseudomonas aeruginosa M18
|
|
Other Names
|
|
|
Legacy ER Project ID
|
18546
|
|
Legacy GOLD ID
|
Gi08583, Gc01979
|
| NCBI BioProject Name | Pseudomonas aeruginosa M18 |
|
NCBI BioProject ID
|
61423 |
|
NCBI BioProject Accession
|
PRJNA61423 |
|
NCBI Locus Tag
|
PAM18
|
|
NCBI BioSample Accession
|
|
| PI | |
| Added By |
Ionna Pagani
on 2011-01-11 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
|
|
Sequencing Center
|
Shanghai Jiao Tong University
(China)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
BMC genomics
12(438):438
Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Pseudomonas aeruginosa M18 |
| Analysis Projects |
Pseudomonas aeruginosa M18 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
67
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0009829 |
| Organism Name |
Pseudomonas aeruginosa M18
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Pseudomonas
|
| Genus Synonyms |
|
| Species |
Pseudomonas aeruginosa
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
M18
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
941193 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Pseudomonadales
|
| NCBI Family |
Pseudomonadaceae
|
| NCBI Genus |
Pseudomonas
|
| NCBI Species |
Pseudomonas aeruginosa
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles |
| Diseases |
Cystic Fibrosis |
| Known Habitats |
Plant surface Soil Host Human airways Wastewater |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Heterotroph |
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
