PROJECT NAME
GOLD Project ID
Gp0009803  
Project Name
Desulfurispirillum indicum S5, DSM 22839  
Other Names
  
Legacy ER Project ID
1811  
Legacy GOLD ID
Gc01930  
NCBI BioProject Name Desulfurispirillum indicum S5
NCBI BioProject ID 38575
NCBI BioProject Accession
PRJNA38575  
NCBI Locus Tag
selin  
NCBI BioSample Accession
SAMN02232016  
PI Elisabetta Bini
Added By Elisabetta Bini on 2010-12-30
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biogeochemical
Bioremediation
Biotechnological
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Desulfurispirillum indicum S5 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Environmental microbiology 13(6):1611-21 Energy metabolism and multiple respiratory pathways revealed by genome sequencing of Desulfurispirillum indicum strain S5.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies CSP_787571, Selenate-reducing bacterium
Analysis Projects Desulfurispirillum indicum S5, DSM 22839
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009803
Organism Name
Desulfurispirillum indicum S5, DSM 22839  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHRYSIOGENETES  
Genus
Desulfurispirillum  
Genus Synonyms
  
Species
Desulfurispirillum indicum  
Subspecies
  
Species Synonyms
  
Strain
S5, DSM 22839  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22839  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.21243  
Exemplar Name
Desulfurispirillum indicum  
Taxon DOI
10.1601/tx.21243  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 653733
NCBI Kingdom
  
NCBI Phylum
Chrysiogenetes  
NCBI Class
Chrysiogenetes  
NCBI Order
Chrysiogenales  
NCBI Family
Chrysiogenaceae  
NCBI Genus
Desulfurispirillum  
NCBI Species
Desulfurispirillum indicum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lotic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
  
Cell Diameter
0.10 - 0.15 um  
Cell Length
2 - 7 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Sediment
Metabolisms Selenate reducer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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