Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0009803
|
|
Project Name
|
Desulfurispirillum indicum S5, DSM 22839
|
|
Other Names
|
|
|
Legacy ER Project ID
|
1811
|
|
Legacy GOLD ID
|
Gc01930
|
| NCBI BioProject Name | Desulfurispirillum indicum S5 |
|
NCBI BioProject Accession
|
PRJNA38575 |
|
NCBI Locus Tag
|
selin
|
|
NCBI BioSample Accession
|
SAMN02232016 |
|
Source Sample ID
|
|
| PI | Elisabetta Bini |
| Added By | Elisabetta Bini on 2010-12-30 |
| Last Modified By | Jon Bertsch on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biogeochemical Environmental Biotechnological Bioremediation |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Desulfurispirillum indicum S5 genome sequencing project
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Environmental microbiology: 13(6):1611-21 Energy metabolism and multiple respiratory pathways revealed by genome sequencing of Desulfurispirillum indicum strain S5. PubMed: 21450009 DOI: 10.1111/j.1462-2920.2011.02473.x |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
CSP_787571, Selenate-reducing bacterium |
| Organism |
Desulfurispirillum indicum S5, DSM 22839 |
| Analysis Projects |
Desulfurispirillum indicum S5, DSM 22839 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina GAIIx 454 GS FLX Titanium |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
56
|
| Chromosome Count |
1
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0009803 |
| Organism Name |
Desulfurispirillum indicum S5, DSM 22839
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
CHRYSIOGENOTA
|
| Genus |
Desulfurispirillum
|
| Genus Synonyms |
|
| Species |
Desulfurispirillum indicum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
S5, DSM 22839
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 22839
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.21243
|
| Exemplar Name |
Desulfurispirillum indicum
|
| Taxon DOI |
10.1601/tx.21243
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
653733 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Chrysiogenota
|
| NCBI Class |
Chrysiogenetes
|
| NCBI Order |
Chrysiogenales
|
| NCBI Family |
Chrysiogenaceae
|
| NCBI Genus |
Desulfurispirillum
|
| NCBI Species |
Desulfurispirillum indicum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Freshwater
|
| Ecosystem Subtype |
Lotic
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
DQ991965 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Spiral-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
0.10 - 0.15 um
|
| Cell Length |
2 - 7 um
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Sediment Aquatic Fresh water |
| Metabolisms |
Selenate reducer |
| Phenotypes |
|
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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