PROJECT NAME
GOLD Project ID
Gp0009700  
Project Name
Streptococcus dysgalactiae equisimilis SK1249  
Other Names
  
Legacy ER Project ID
1836  
Legacy GOLD ID
Gi08623  
NCBI BioProject Name Streptococcus dysgalactiae subsp. equisimilis SK1249
NCBI BioProject ID 64681
NCBI BioProject Accession
PRJNA64681  
NCBI Locus Tag
HMPREF9964  
NCBI BioSample Accession
SAMN00621722  
PI Dodson R.
Added By Konstantinos Liolios on 2011-01-12
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Streptococcus dysgalactiae equisimilis SK1249
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
87281  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009700
Organism Name
Streptococcus dysgalactiae equisimilis SK1249  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
Streptococcus dysgalactiae  
Subspecies
equisimilis  
Species Synonyms
  
Strain
SK1249  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCUG 36637  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5629  
Exemplar Name
Streptococcus dysgalactiae equisimilis  
Taxon DOI
10.1601/tx.5629  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1000589
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus dysgalactiae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9964  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-12-17  
Date Sequencing Begins
2011-02-04  
Date Draft Sequencing Completed
2011-03-09  
Cross Reference ID
  

 

 

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