PROJECT NAME
GOLD Project ID
Gp0009484  
Project Name
Hafnia alvei Stuart 32011, ATCC 13337  
Other Names
  
Legacy ER Project ID
18214  
Legacy GOLD ID
Gi08260  
NCBI BioProject Name Hafnia alvei ATCC 13337
NCBI BioProject ID 59557
NCBI BioProject Accession
PRJNA59557  
NCBI Locus Tag
GHAL  
NCBI BioSample Accession
SAMN02743263  
PI
Added By Ioanna Pagani on 2010-11-02 00:00:00.0
Last Modified By Auto script update processes on 2014-08-18 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Pathogen
Medical
Sequencing Center University of Wisconsin, Madison (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
This is an opportunistic pathogen. The strain was purchased from ATCC, and DNA was prepared at the University of Wisconsin - Genome Evolution Laboratory. This is the type strain of the genus Hafnia, and is being sequenced as part of a project to increase the breadth of genome sequence data available for the Enterobacteriaceae.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Univ of Wisconsin
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Hafnia alvei Stuart 32011, ATCC 13337
Analysis Projects Hafnia alvei Stuart 32011, ATCC 13337
Hafnia alvei Stuart 32011, ATCC 13337
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009484
Organism Name
Hafnia alvei Stuart 32011, ATCC 13337  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Hafnia  
Genus Synonyms
  
Species
Hafnia alvei  
Subspecies
  
Species Synonyms
  
Strain
ATCC 13337  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 13337  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3201  
Exemplar Name
Hafnia alvei  
Taxon DOI
10.1601/tx.3201  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 910996
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Hafnia  
NCBI Species
Hafnia alvei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Feces
Gastrointestinal tract
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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