| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0009137
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Project Name
|
Acetobacterium woodii WB1, DSM 1030
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Other Names
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Legacy ER Project ID
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18424
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Legacy GOLD ID
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Gi08478, Gc02124
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| NCBI BioProject Name | Acetobacterium woodii DSM 1030 |
|
NCBI BioProject ID
|
60713 |
|
NCBI BioProject Accession
|
PRJNA60713 |
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NCBI Locus Tag
|
AWO
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NCBI BioSample Accession
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|
| PI | Volker Mueller |
| Added By |
Ionna Pagani
on 2010-12-07 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
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Project Status
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Complete and Published
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|
Project Relevance
|
Biochemical Acetate production |
|
Sequencing Center
|
University of Gottingen
(Germany)
|
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Collaborating Institute
|
University of Gottingen
(Germany)
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Funding Agency
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Project Description
|
Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Beside CO2 A. woodii can use alternative electron acceptors like the lignin degradation product caffeate.
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
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Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
|
PloS one
7(3):e33439
An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.
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Other Publications
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| PROJECT COMPOSITION | |
| Study |
Acetobacterium woodii WB1, DSM 1030 |
| Analysis Projects |
Acetobacterium woodii WB1, DSM 1030 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
|
Level 6: Finished |
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Sequencing Comments
|
|
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Sequencing Technology
(MIGS-29)
|
454 GS FLX Sanger 454 GS FLX Titanium |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
39
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| Chromosome Count |
1
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| Plasmid Count |
0
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0009137 |
| Organism Name |
Acetobacterium woodii WB1, DSM 1030
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Acetobacterium
|
| Genus Synonyms |
|
| Species |
Acetobacterium woodii
|
| Subspecies |
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| Species Synonyms |
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| Strain |
WB1, DSM 1030
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| Strain Synonyms |
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| Serovar-Biovar |
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| Culture Collection ID |
DSM 1030
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.4285
|
| Exemplar Name |
Acetobacterium woodii
|
| Taxon DOI |
10.1601/tx.4285
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| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
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ORGANISM TAXONOMY
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|
| NCBI Taxonomy ID |
931626 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
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| NCBI Phylum |
Firmicutes
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| NCBI Class |
Clostridia
|
| NCBI Order |
Clostridiales
|
| NCBI Family |
Eubacteriaceae
|
| NCBI Genus |
Acetobacterium
|
| NCBI Species |
Acetobacterium woodii
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Intertidal zone
|
| Specific Ecosystem |
Sediment
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| Synonym List |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
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| Cell Shape |
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| Motility |
Motile
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| Sporulation |
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| Temperature Range |
Mesophile
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| Temperature Optimum |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
Singles |
| Diseases |
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| Known Habitats |
Sediment Mud Aquatic Ponds |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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