Studies
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56,010 |
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Biosamples
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183,990 |
|
Sequencing Projects
|
508,072 |
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Analysis Projects
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381,498 |
| Organisms | 480,512 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0009137
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Project Name
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Acetobacterium woodii WB1, DSM 1030
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Other Names
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Legacy ER Project ID
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18424
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Legacy GOLD ID
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Gi08478, Gc02124
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| NCBI BioProject Name | Acetobacterium woodii DSM 1030 |
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NCBI BioProject Accession
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PRJNA60713 |
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NCBI Locus Tag
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AWO
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NCBI BioSample Accession
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Source Sample ID
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| PI | Volker Mueller |
| Added By | Ionna Pagani on 2010-12-07 |
| Last Modified By | Jon Bertsch on 2014-04-08 |
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Biochemical Acetate production |
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Sequencing Center
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University of Gottingen
(Germany)
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Collaborating Institute
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University of Gottingen
(Germany)
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Funding Agency
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Project Description
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Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Beside CO2 A. woodii can use alternative electron acceptors like the lignin degradation product caffeate.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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PloS one: 7(3):e33439 An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PubMed: 22479398 DOI: 10.1371/journal.pone.0033439 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Acetobacterium woodii WB1, DSM 1030 |
| Organism |
Acetobacterium woodii WB1, DSM 1030 |
| Analysis Projects |
Acetobacterium woodii WB1, DSM 1030 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Level 6: Finished |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 GS FLX Sanger 454 GS FLX Titanium |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
39
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| Chromosome Count |
1
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| Plasmid Count |
0
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0009137 |
| Organism Name |
Acetobacterium woodii WB1, DSM 1030
|
| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
FIRMICUTES
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| Genus |
Acetobacterium
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| Genus Synonyms |
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| Species |
Acetobacterium woodii
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| Subspecies |
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| Species Synonyms |
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| Strain |
WB1, DSM 1030
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 1030
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.4285
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| Exemplar Name |
Acetobacterium woodii
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| Taxon DOI |
10.1601/tx.4285
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| Biosafety Level |
1
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
931626 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Firmicutes
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| NCBI Class |
Clostridia
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| NCBI Order |
Eubacteriales
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| NCBI Family |
Eubacteriaceae
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| NCBI Genus |
Acetobacterium
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| NCBI Species |
Acetobacterium woodii
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Marine
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| Ecosystem Subtype |
Intertidal zone
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| Specific Ecosystem |
Sediment
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
X96954 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
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| Cell Shape |
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| Motility |
Motile
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
Singles |
| Diseases |
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| Known Habitats |
Sediment Aquatic Mud Ponds |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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