| PROJECT NAME | |
|---|---|
GOLD Project ID
|
Gp0009137
|
|
Project Name
|
Acetobacterium woodii WB1, DSM 1030
|
|
Other Names
|
|
|
Legacy ER Project ID
|
18424
|
|
Legacy GOLD ID
|
Gi08478, Gc02124
|
| NCBI BioProject Name | Acetobacterium woodii DSM 1030 |
|
NCBI BioProject ID
|
60713 |
|
NCBI BioProject Accession
|
PRJNA60713 |
|
NCBI Locus Tag
|
AWO
|
|
NCBI BioSample Accession
|
|
| PI | Volker Mueller |
| Added By |
Ionna Pagani
on 2010-12-07 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| PROJECT INFORMATION | |
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biochemical Acetate production |
|
Sequencing Center
|
University of Gottingen
(Germany)
|
|
Collaborating Institute
|
University of Gottingen
(Germany)
|
|
Funding Agency
|
|
|
Project Description
|
Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Beside CO2 A. woodii can use alternative electron acceptors like the lignin degradation product caffeate.
|
|
Project Information Visibility
|
Public |
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
PloS one
7(3):e33439
An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Acetobacterium woodii WB1, DSM 1030 |
| Analysis Projects |
Acetobacterium woodii WB1, DSM 1030 |
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
|
Sequencing Quality
(MIGS-31)
|
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger 454-GS-FLX-Titanium 454-GS-FLX |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
39
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0009137 |
| Organism Name |
Acetobacterium woodii WB1, DSM 1030
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Acetobacterium
|
| Genus Synonyms |
|
| Species |
Acetobacterium woodii
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
WB1, DSM 1030
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 1030
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.4285
|
| Exemplar Name |
Acetobacterium woodii
|
| Taxon DOI |
10.1601/tx.4285
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
931626 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Clostridia
|
| NCBI Order |
Clostridiales
|
| NCBI Family |
Eubacteriaceae
|
| NCBI Genus |
Acetobacterium
|
| NCBI Species |
Acetobacterium woodii
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Intertidal zone
|
| Specific Ecosystem |
Sediment
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
|
| Motility |
Motile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles |
| Diseases |
|
| Known Habitats |
Sediment Aquatic Mud Ponds |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the AP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
