PROJECT INFORMATION | |
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GOLD Project ID
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Gp0009137
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Project Name
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Acetobacterium woodii WB1, DSM 1030
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Other Names
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Legacy ER Project ID
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18424
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Legacy GOLD ID
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Gi08478, Gc02124
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NCBI BioProject Name | Acetobacterium woodii DSM 1030 |
NCBI BioProject Accession
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PRJNA60713 |
NCBI Locus Tag
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AWO
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NCBI BioSample Accession
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Source Sample ID
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PI | Volker Mueller |
Added By | Ionna Pagani on 2010-12-07 |
Last Modified By | Jon Bertsch on 2014-04-08 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Biochemical Acetate production |
Sequencing Center
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University of Gottingen
(Germany)
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Collaborating Institute
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University of Gottingen
(Germany)
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Funding Agency
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Project Description
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Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Beside CO2 A. woodii can use alternative electron acceptors like the lignin degradation product caffeate.
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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PloS one: 7(3):e33439 An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PubMed: 22479398 DOI: 10.1371/journal.pone.0033439 |
Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Acetobacterium woodii WB1, DSM 1030 |
Organism |
Acetobacterium woodii WB1, DSM 1030 |
Analysis Projects |
Acetobacterium woodii WB1, DSM 1030 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 GS FLX Sanger 454 GS FLX Titanium |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
39
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Chromosome Count |
1
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Plasmid Count |
0
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ORGANISM NAME | |
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GOLD Organism ID |
Go0009137 |
Organism Name |
Acetobacterium woodii WB1, DSM 1030
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
FIRMICUTES
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Genus |
Acetobacterium
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Genus Synonyms |
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Species |
Acetobacterium woodii
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Subspecies |
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Species Synonyms |
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Strain |
WB1, DSM 1030
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
DSM 1030
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.4285
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Exemplar Name |
Acetobacterium woodii
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Taxon DOI |
10.1601/tx.4285
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Biosafety Level |
1
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
931626 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Firmicutes
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NCBI Class |
Clostridia
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NCBI Order |
Eubacteriales
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NCBI Family |
Eubacteriaceae
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NCBI Genus |
Acetobacterium
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NCBI Species |
Acetobacterium woodii
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ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Aquatic
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Ecosystem Type |
Marine
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Ecosystem Subtype |
Intertidal zone
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Specific Ecosystem |
Sediment
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
X96954 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
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Cell Shape |
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Motility |
Motile
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Sporulation |
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Temperature Range |
Mesophile
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram+
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
Singles |
Diseases |
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Known Habitats |
Sediment Aquatic Mud Ponds |
Metabolisms |
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Phenotypes |
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Energy Sources |
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