PROJECT INFORMATION
GOLD Project ID
Gp0009137  
Project Name
Acetobacterium woodii WB1, DSM 1030  
Other Names
  
Legacy ER Project ID
18424  
Legacy GOLD ID
Gi08478, Gc02124  
NCBI BioProject Name Acetobacterium woodii DSM 1030
NCBI BioProject Accession PRJNA60713
NCBI Locus Tag
AWO  
NCBI BioSample Accession
Source Sample ID
PI Volker Mueller
Added By Ionna Pagani on 2010-12-07
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biochemical
Acetate production
Sequencing Center University of Gottingen (Germany)
Collaborating Institute University of Gottingen (Germany)
Funding Agency
  
Project Description
Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Beside CO2 A. woodii can use alternative electron acceptors like the lignin degradation product caffeate.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications PloS one: 7(3):e33439 An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.
PubMed: 22479398 DOI: 10.1371/journal.pone.0033439
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Acetobacterium woodii WB1, DSM 1030
Organism Acetobacterium woodii WB1, DSM 1030
Analysis Projects Acetobacterium woodii WB1, DSM 1030
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX
Sanger
454 GS FLX Titanium
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0009137
Organism Name
Acetobacterium woodii WB1, DSM 1030  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Acetobacterium  
Genus Synonyms
  
Species
Acetobacterium woodii  
Subspecies
  
Species Synonyms
  
Strain
WB1, DSM 1030  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 1030  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4285  
Exemplar Name
Acetobacterium woodii  
Taxon DOI
10.1601/tx.4285  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 931626
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Eubacteriaceae  
NCBI Genus
Acetobacterium  
NCBI Species
Acetobacterium woodii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X96954
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Sediment
Aquatic
Mud
Ponds
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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