Studies
|
38,701 |
|
Biosamples
|
80,986 |
|
Sequencing Projects
|
303,644 |
|
Analysis Projects
|
245,546 |
| Organisms | 361,577 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0009017
|
|
Project Name
|
Serratia plymuthica AS9
|
|
Other Names
|
|
|
Legacy ER Project ID
|
18378
|
|
Legacy GOLD ID
|
Gi08428, Gc01772
|
| NCBI BioProject Name | Serratia sp. AS9 |
|
NCBI BioProject ID
|
60457 |
|
NCBI BioProject Accession
|
PRJNA60457 |
|
NCBI Locus Tag
|
SerAS9
|
|
NCBI BioSample Accession
|
SAMN00713621 |
| PI | Nils Hoegberg |
| Added By |
Ionna Pagani
on 2010-11-24 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Agricultural |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
ANRT
(France)
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Serratia sp. AS9 genome sequencing project
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
Standards in genomic sciences
6(1):54-62
Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens. |
| Organism |
Serratia plymuthica AS9 |
| Analysis Projects |
Serratia plymuthica AS9 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina GAIIx 454 GS FLX Titanium |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
56
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0009017 |
| Organism Name |
Serratia plymuthica AS9
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Serratia
|
| Genus Synonyms |
|
| Species |
Serratia plymuthica
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
AS9
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
CCUG 61396
|
| Type Strain |
No
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
768492 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Yersiniaceae
|
| NCBI Genus |
Serratia
|
| NCBI Species |
Serratia plymuthica
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
Rhizoplane
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
25
|
| Salinity |
|
| pH |
|
| Cell Diameter |
0.5 - 0.7 um
|
| Cell Length |
1 - 2 um
|
| Color |
Pink
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
Endosymbiotic extracellular
|
| Symbiotic Relationship |
|
| Symbiont Name |
Rapeseeed plant
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Soil Host Rhizosphere |
| Metabolisms |
Cellulose degrader |
| Phenotypes |
|
| Energy Sources |
Chemoorganotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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