PROJECT NAME
GOLD Project ID
Gp0009017  
Project Name
Serratia plymuthica AS9  
Other Names
  
Legacy ER Project ID
18378  
Legacy GOLD ID
Gi08428, Gc01772  
NCBI BioProject Name Serratia sp. AS9
NCBI BioProject ID 60457
NCBI BioProject Accession
PRJNA60457  
NCBI Locus Tag
SerAS9  
NCBI BioSample Accession
SAMN00713621  
PI Nils Hoegberg
Added By Ioanna Pagani on 2010-11-24
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute ANRT (France)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Serratia sp. AS9 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 6(1):54-62 Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.
Other Publications
  
PROJECT COMPOSITION
Studies Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens.
Analysis Projects Serratia plymuthica AS9
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0009017
Organism Name
Serratia plymuthica AS9  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Serratia  
Genus Synonyms
  
Species
Serratia plymuthica  
Subspecies
  
Species Synonyms
  
Strain
AS9  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCUG 61396  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 82996
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Yersiniaceae  
NCBI Genus
Serratia  
NCBI Species
Serratia plymuthica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25  
Salinity
  
pH
  
Cell Diameter
0.5 - 0.7 um  
Cell Length
1 - 2 um  
Color
Pink  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
Endosymbiotic extracellular  
Symbiotic Relationship
  
Symbiont Name
Rapeseeed plant  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Rhizosphere
Soil
Metabolisms Cellulose degrader
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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