PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0009017
|
Project Name
![]() |
Serratia plymuthica AS9
|
Other Names
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|
Legacy ER Project ID
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18378
|
Legacy GOLD ID
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Gi08428, Gc01772
|
NCBI BioProject Name | Serratia sp. AS9 |
NCBI BioProject ID
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60457 |
NCBI BioProject Accession
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PRJNA60457 |
NCBI Locus Tag
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SerAS9
|
NCBI BioSample Accession
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SAMN00713621 |
PI | Nils Hoegberg |
Added By |
Ionna Pagani
on 2010-11-24 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Agricultural |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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ANRT
(France)
|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
|
Project Description
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Serratia sp. AS9 genome sequencing project
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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|
Database
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|
Genome Publications
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Standards in genomic sciences
6(1):54-62
Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens. |
Organism |
Serratia plymuthica AS9 |
Analysis Projects |
Serratia plymuthica AS9 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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Illumina GAIIx 454 GS FLX Titanium |
Library Method
(MIGS-28)
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|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
56
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0009017 |
Organism Name |
Serratia plymuthica AS9
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-GAMMA
|
Genus |
Serratia
|
Genus Synonyms |
|
Species |
Serratia plymuthica
|
Subspecies |
|
Species Synonyms |
|
Strain |
AS9
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
CCUG 61396
|
Type Strain |
No
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
768492 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Gammaproteobacteria
|
NCBI Order |
Enterobacterales
|
NCBI Family |
Yersiniaceae
|
NCBI Genus |
Serratia
|
NCBI Species |
Serratia plymuthica
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Plants
|
Ecosystem Type |
Rhizoplane
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
|
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Facultative
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
25
|
Salinity |
|
pH |
|
Cell Diameter |
0.5 - 0.7 um
|
Cell Length |
1 - 2 um
|
Color |
Pink
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
Endosymbiotic extracellular
|
Symbiotic Relationship |
|
Symbiont Name |
Rapeseeed plant
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
None |
Known Habitats |
Soil Host Rhizosphere |
Metabolisms |
Cellulose degrader |
Phenotypes |
|
Energy Sources |
Chemoorganotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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