PROJECT INFORMATION | |
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GOLD Project ID
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Gp0008854
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Project Name
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Teredinibacter waterburyi Bs02
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Other Names
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Legacy ER Project ID
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1745
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Legacy GOLD ID
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Gi0001745
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NCBI BioProject Name | Teredinibacter waterburyi Bs02 |
NCBI BioProject ID
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351858 |
NCBI BioProject Accession
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PRJNA351858 |
NCBI Locus Tag
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|
NCBI BioSample Accession
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SAMN05956373 |
PI | Rex Malmstrom |
Added By |
Rex Malmstrom
on 2010-11-22 |
Last Modified By |
Supratim Mukherjee
on 2020-05-11 |
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Cellulase production Bioenergy |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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Funding Agency
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Project Description
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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Database
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Genome Publications
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Proceedings of the National Academy of Sciences of the United States of America
111(47):E5096-104
Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk.
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Teredinibacter waterburyi Bs02 genome sequencing |
Organism |
Teredinibacter waterburyi Bs02 |
Analysis Projects |
Teredinibacter waterburyi Bs02 |
Number of Analysis Projects (AP) |
1
|
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina GAIIx |
Library Method
(MIGS-28)
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Illumina paired end, 76bp reads
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
48
|
Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0418769 |
Organism Name |
Teredinibacter waterburyi Bs02
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-GAMMA
|
Genus |
Teredinibacter
|
Genus Synonyms |
|
Species |
Teredinibacter waterburyi
|
Subspecies |
|
Species Synonyms |
|
Strain |
Bs02
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
ATCC TSD-120
|
Type Strain |
Yes
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
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Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
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ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
1500538 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Gammaproteobacteria
|
NCBI Order |
Cellvibrionales
|
NCBI Family |
Cellvibrionaceae
|
NCBI Genus |
Teredinibacter
|
NCBI Species |
Teredinibacter waterburyi
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Mollusca
|
Ecosystem Type |
Respiratory system
|
Ecosystem Subtype |
Gills
|
Specific Ecosystem |
Intracellular
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
MK938300 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
|
Temperature Range |
Mesophile
|
Salinity |
Halotolerant
|
pH |
6.5
|
Cell Diameter |
0.4–0.6 µm
|
Cell Length |
2–6 µm
|
Color |
White
|
Gram Staining |
Gram-
|
Biotic Relationships | Symbiotic |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
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Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles |
Diseases |
Undefined |
Known Habitats |
Mollusca |
Metabolisms |
Cellulose degrader |
Phenotypes |
Intracellular |
Energy Sources |
Heterotroph |
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
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Position Of Heterocysts |
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Cysts |
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Mode Of Reproduction |
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Trichome |
|
Trichome Type |
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Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
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Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
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Secondary Metabolites |
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Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
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Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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