PROJECT INFORMATION
GOLD Project ID
Gp0008774  
Project Name
Methanobacterium paludis SWAN-1  
Other Names
  
Legacy ER Project ID
17802  
Legacy GOLD ID
Gi07602, Gc01780  
NCBI BioProject Name Methanobacterium sp. SWAN-1
NCBI BioProject ID 53561
NCBI BioProject Accession PRJNA53561
NCBI Locus Tag
MSWAN  
NCBI BioSample Accession SAMN00713630
PI Wen-Tso Liu
Added By Ionna Pagani on 2010-09-03
Last Modified By Galina Ovchinnikova on 2017-03-24
Project Comments
  
Project Status
Complete and Published  
Project Relevance Bioenergy
Comparative analysis
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Illinois, Urbana-Champaign (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methanobacterium sp. SWAN-1 genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome sequencing and comparison of novel methanogens from peatlands and bioreactors
Analysis Projects Methanobacterium paludis SWAN-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
36  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0008774
Organism Name
Methanobacterium paludis SWAN-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOBACTERIA  
Genus
Methanobacterium  
Genus Synonyms
  
Species
Methanobacterium paludis  
Subspecies
  
Species Synonyms
  
Strain
SWAN-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.25372  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 868131
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanobacteria  
NCBI Order
Methanobacteriales  
NCBI Family
Methanobacteriaceae  
NCBI Genus
Methanobacterium  
NCBI Species
Methanobacterium paludis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms Methanogen
Phenotypes
  
Energy Sources Lithotroph

 

 

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