PROJECT INFORMATION
GOLD Project ID
Gp0008573  
Project Name
Lactobacillus amylovorus 30SC  
Other Names
  
Legacy ER Project ID
1221  
Legacy GOLD ID
Gi07737, Gc01676  
NCBI BioProject Name Lactobacillus amylovorus 30SC
NCBI BioProject ID 53145
NCBI BioProject Accession PRJNA53145
NCBI Locus Tag
LAC30SC  
NCBI BioSample Accession
PI
Added By Ionna Pagani on 2010-09-30
Last Modified By Supratim Mukherjee on 2017-03-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Food industry
Medical
Sequencing Center Korea University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Lactobacillus acidophilus 30SC genome sequencing project.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(11):2882-3 Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine.
Other Publications
  
PROJECT COMPOSITION
Study Lactobacillus amylovorus 30SC
Analysis Projects Lactobacillus amylovorus 30SC
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0008573
Organism Name
Lactobacillus amylovorus 30SC  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus amylovorus  
Subspecies
  
Species Synonyms
  
Strain
30SC  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1604
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus amylovorus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
4-5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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