PROJECT NAME
GOLD Project ID
Gp0008463  
Project Name
Aggregatibacter actinomycetemcomitans sv. a H5P1  
Other Names
  
Legacy ER Project ID
18127  
Legacy GOLD ID
Gi07960  
NCBI BioProject Name Aggregatibacter actinomycetemcomitans serotype a str. H5P1
NCBI BioProject ID 53925
NCBI BioProject Accession
PRJNA53925  
NCBI Locus Tag
H5P1  
NCBI BioSample Accession
SAMN02471947  
PI Casey Chen
Added By Ioanna Pagani on 2010-10-13
Last Modified By Auto script update processes on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Animal Pathogen
Human Pathogen
Medical
Sequencing Center University of Washington (USA)
Collaborating Institute University of Southern California (USA)
Funding Agency
  
Project Description
Aggregatibacter actinomycetemcomitans serotype a str. H5P1 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 6(7):e22420 Identification of the pangenome and its components in 14 distinct Aggregatibacter actinomycetemcomitans strains by comparative genomic analysis.
Other Publications
  
PROJECT COMPOSITION
Studies Aggregatibacter genome sequencing, USC School of Dentistry, USA
Analysis Projects Aggregatibacter actinomycetemcomitans sv. a H5P1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008463
Organism Name
Aggregatibacter actinomycetemcomitans sv. a H5P1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aggregatibacter  
Genus Synonyms
  
Species
Aggregatibacter actinomycetemcomitans  
Subspecies
  
Species Synonyms
  
Strain
H5P1  
Strain Synonyms
  
Serovar-Biovar
a  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 907486
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Aggregatibacter  
NCBI Species
Aggregatibacter actinomycetemcomitans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Singles
Diseases Periodontal infection
Periodontitis
Known Habitats Clinical isolate
Host
Human oral cavity
Oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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