PROJECT NAME
GOLD Project ID
Gp0008421  
Project Name
Herbaspirillum frisingense GSF30  
Other Names
  
Legacy ER Project ID
17518  
Legacy GOLD ID
Gi07291  
NCBI BioProject Name Herbaspirillum frisingense GSF30
NCBI BioProject ID 50373
NCBI BioProject Accession
PRJNA50373  
NCBI Locus Tag
HFRIS  
NCBI BioSample Accession
SAMN02471292  
PI
Added By Ioanna Pagani on 2010-07-19
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Agricultural
Biotechnological
Sequencing Center
  
Collaborating Institute Darmstadt University of Technology
Funding Agency
  
Project Description
Herbaspirillum frisingense GSF30 is a diazotrophic endophyte of grasses, especially biomass grasses.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Publication
Database
  
Genome Publications Frontiers in microbiology The genome of the endophytic bacterium H. frisingense GSF30(T) identifies diverse strategies in the Herbaspirillum genus to interact with plants.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Herbaspirillum frisingense GSF30
Analysis Projects Herbaspirillum frisingense GSF30
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008421
Organism Name
Herbaspirillum frisingense GSF30  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Herbaspirillum  
Genus Synonyms
  
Species
Herbaspirillum frisingense  
Subspecies
  
Species Synonyms
  
Strain
GSF30  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCUG 47444  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1707  
Exemplar Name
Herbaspirillum frisingense  
Taxon DOI
10.1601/tx.1707  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 864073
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Herbaspirillum  
NCBI Species
Herbaspirillum frisingense  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Phylloplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
30-37C  
Salinity
  
pH
6.0-7.0  
Cell Diameter
0.5-0.7um  
Cell Length
1.4-1.8um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Plants (Spartina pectinata, Miscanthus sinensis, Miscanthus sacchariorus and Pennisetum purpureum.)  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Plant root
Plant surface
Plants
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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