PROJECT NAME
GOLD Project ID
Gp0008361  
Project Name
Sphingobium indicum B90A  
Other Names
  
Legacy ER Project ID
17499  
Legacy GOLD ID
Gi07274  
NCBI BioProject Name Sphingobium indicum B90A
NCBI BioProject ID 50313
NCBI BioProject Accession
PRJNA50313  
NCBI Locus Tag
SIDU  
NCBI BioSample Accession
SAMN02471717  
PI
Added By Ioanna Pagani on 2010-07-06 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biodegradation of pollutants
Biotechnological
Sequencing Center
  
Collaborating Institute University of Delhi (India)
Funding Agency
  
Project Description
Sphingobium indicum B90A genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(16):4471-2 Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Sphingobium indicum B90A
Analysis Projects Sphingobium indicum B90A
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008361
Organism Name
Sphingobium indicum B90A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingobium  
Genus Synonyms
  
Species
Sphingobium indicum  
Subspecies
  
Species Synonyms
  
Strain
B90A  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16412  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.9623  
Exemplar Name
Sphingobium indicum  
Taxon DOI
10.1601/tx.9623  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 861109
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Sphingobium  
NCBI Species
Sphingobium indicum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY519129
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Rhizosphere
Soil
Metabolisms Hexachlorocyclohexane degrader
Phenotypes
  
Energy Sources
  

 

 

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