PROJECT NAME
GOLD Project ID
Gp0008334  
Project Name
Vibrio tubiashii NCIMB 1337  
Other Names
  
Legacy ER Project ID
17542  
Legacy GOLD ID
Gi07317  
NCBI BioProject Name Vibrio tubiashii NCIMB 1337
NCBI BioProject ID 50651
NCBI BioProject Accession
PRJNA50651  
NCBI Locus Tag
VT1337  
NCBI BioSample Accession
SAMN02470815  
PI Ben Temperton
Added By Ioanna Pagani on 2010-07-22
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Fish Pathogen
Sequencing Center
  
Collaborating Institute Plymouth Marine Laboratory (United Kingdom)
University of Edinburgh (United Kingdom)
Funding Agency
  
Project Description
Vibrio tubiashii NCIMB 1337 Genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 4(2):183-90 Permanent draft genome sequence of Vibrio tubiashii strain NCIMB 1337 (ATCC19106).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Vibrio tubiashii NCIMB 1337
Analysis Projects Vibrio tubiashii NCIMB 1337
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0008334
Organism Name
Vibrio tubiashii Milford 27 (Type O)  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
Microspira pacinia  
Species
Vibrio tubiashii  
Subspecies
  
Species Synonyms
  
Strain
Milford 27 (Type O)  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NCIMB 1337  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 866909
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio tubiashii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mollusca  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25  
Salinity
  
pH
7-9  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Vibriosis
Known Habitats Host
Marine
Surface water
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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