PROJECT NAME
GOLD Project ID
Gp0007942  
Project Name
Saccharomonospora marina XMU15, DSM 45390  
Other Names
  
Legacy ER Project ID
17761  
Legacy GOLD ID
Gi07581  
NCBI BioProject Name Saccharomonospora marina XMU15
NCBI BioProject ID 61991
NCBI BioProject Accession
PRJNA61991  
NCBI Locus Tag
Sacma  
NCBI BioSample Accession
SAMN02261396  
PI Hans-Peter Klenk
Added By Ioanna Pagani on 2010-09-02
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Bioenergy
Comparative analysis
Evolution
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Saccharomonospora marina XMU15 genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 6(2):265-75 Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)).
Other Publications
  
PROJECT COMPOSITION
Studies Whole genome type strain sequences of the genus Saccharomonospora - a taxonomically troubled genus with bioenergetic potential
Analysis Projects Saccharomonospora marina XMU15, DSM 45390
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007942
Organism Name
Saccharomonospora marina XMU15, DSM 45390  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Saccharomonospora  
Genus Synonyms
  
Species
Saccharomonospora marina  
Subspecies
  
Species Synonyms
  
Strain
XMU15  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCTCC AA 209048  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.19982  
Exemplar Name
Saccharomonospora marina  
Taxon DOI
10.1601/tx.19982  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 882083
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Saccharomonospora  
NCBI Species
Saccharomonospora marina  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
28-37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases None
Known Habitats Marine
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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