PROJECT INFORMATION
GOLD Project ID
Gp0007728  
Project Name
Lachnoclostridium clostridioforme 90A4  
Other Names
  
Legacy ER Project ID
1999  
Legacy GOLD ID
Gi09087  
NCBI BioProject Name Clostridium clostridioforme 90A4
NCBI BioProject ID 64861
NCBI BioProject Accession PRJNA64861
NCBI Locus Tag
HMPREF1081  
NCBI BioSample Accession SAMN02596763
PI Birren, B
Added By Konstantinos Liolios on 2011-02-25
Last Modified By Supratim Mukherjee on 2018-06-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Lachnoclostridium clostridioforme 90A4
Analysis Projects Lachnoclostridium clostridioforme 90A4
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007728
Organism Name
Lachnoclostridium clostridioforme 90A4  
Other names (alias, synonyms, short names, common names)
Clostridium clostridioforme 90A4  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lachnoclostridium  
Genus Synonyms
Clostridium  
Species
Lachnoclostridium clostridioforme  
Subspecies
  
Species Synonyms
  
Strain
90A4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CIP 110238  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 999405
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Enterocloster  
NCBI Species
Enterocloster clostridioformis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
1081  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public at NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2011-06-06  
Date Sequencing Begins
2011-06-06  
Date Draft Sequencing Completed
2011-12-07  
Cross Reference ID
  

 

 

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