PROJECT INFORMATION
GOLD Project ID
Gp0007583  
Project Name
Herbaspirillum seropedicae SmR1  
Other Names
  
Legacy ER Project ID
17008  
Legacy GOLD ID
Gi06624, Gc01315  
NCBI BioProject Name Herbaspirillum seropedicae SmR1
NCBI BioProject ID 47945
NCBI BioProject Accession PRJNA47945
NCBI Locus Tag
HSERO  
NCBI BioSample Accession
PI
Added By Nikos Kyrpides on 2010-05-04
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Root Nodulating Bacteria (RNB)
Agricultural
Biotechnological
Sequencing Center Federal University of Parana (Brazil)
Collaborating Institute
  
Funding Agency
  
Project Description
an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Herbaspirillum seropedicae SmR1
Analysis Projects Herbaspirillum seropedicae SmR1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0007583
Organism Name
Herbaspirillum seropedicae SmR1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Herbaspirillum  
Genus Synonyms
  
Species
Herbaspirillum seropedicae  
Subspecies
  
Species Synonyms
  
Strain
SmR1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 757424
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Oxalobacteraceae  
NCBI Genus
Herbaspirillum  
NCBI Species
Herbaspirillum seropedicae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Rice  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Root nodule
Soil
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources
  

 

 

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