PROJECT NAME
GOLD Project ID
Gp0007471  
Project Name
Thiocapsa marina 5811, DSM 5653  
Other Names
  
Legacy ER Project ID
17242  
Legacy GOLD ID
Gi06850  
NCBI BioProject Name Thiocapsa marina 5811
NCBI BioProject ID 63055
NCBI BioProject Accession
PRJNA63055  
NCBI Locus Tag
Thima  
NCBI BioSample Accession
SAMN02261407  
PI Donald A. Bryant
Added By Nikos Kyrpides on 2010-05-31
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Bioremediation
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thiocapsa marina 5811 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Genome sequencing of representative photosynthetic purple sulfur bacteria
Analysis Projects Thiocapsa marina 5811, DSM 5653
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007471
Organism Name
Thiocapsa marina 5811, DSM 5653  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Thiocapsa  
Genus Synonyms
  
Species
Thiocapsa marina  
Subspecies
  
Species Synonyms
  
Strain
5811, DSM 5653  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 5653  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8891  
Exemplar Name
Thiocapsa marina  
Taxon DOI
10.1601/tx.8891  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 768671
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Chromatiales  
NCBI Family
Chromatiaceae  
NCBI Genus
Thiocapsa  
NCBI Species
Thiocapsa marina  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Saline  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
Euryhaline  
pH
  
Cell Diameter
  
Cell Length
1.5-3.0um  
Color
Purple  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Bovine rumen
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
No  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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