PROJECT NAME
GOLD Project ID
Gp0007243  
Project Name
Isoptericola variabilis 225  
Other Names
  
Legacy ER Project ID
1035  
Legacy GOLD ID
Gi07075, Gc01774  
NCBI BioProject Name Isoptericola variabilis 225
NCBI BioProject ID 49657
NCBI BioProject Accession
PRJNA49657  
NCBI Locus Tag
Isova  
NCBI BioSample Accession
SAMN00713634  
PI John Gladden
Added By Ioanna Pagani on 2010-06-23
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biofuels
Biomass conversion
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute DOE Joint Bioenergy Institute (JBEI) (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Isoptericola variabilis 225 genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Compost Feedstock-Adapted Isolates
Analysis Projects Isoptericola variabilis 225
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
454 Paired-end  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
74  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007243
Organism Name
Isoptericola variabilis 225  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Isoptericola  
Genus Synonyms
  
Species
Isoptericola variabilis  
Subspecies
  
Species Synonyms
  
Strain
225  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 743718
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Promicromonosporaceae  
NCBI Genus
Isoptericola  
NCBI Species
Isoptericola variabilis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Insecta  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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