PROJECT INFORMATION
GOLD Project ID
Gp0007238  
Project Name
Halalkalicoccus jeotgali B3, DSM 18796  
Other Names
  
Legacy ER Project ID
17274  
Legacy GOLD ID
Gi06997, Gc01320  
NCBI BioProject Name Halalkalicoccus jeotgali B3
NCBI BioProject ID 49517
NCBI BioProject Accession PRJNA49517
NCBI Locus Tag
HACJB3  
NCBI BioSample Accession
PI Jin-Woo Bae
Added By Ionna Pagani on 2010-06-11
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Fish Pathogen
Sequencing Center Kyunghee University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Halalkalicoccus jeotgali B3 genome sequencing project.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 192(17):4528-9 Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon.
Other Publications
  
PROJECT COMPOSITION
Study Halalkalicoccus jeotgali B3, DSM 18796
Analysis Projects Halalkalicoccus jeotgali B3, DSM 18796
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
1  
Plasmid Count
6  
ORGANISM NAME
GOLD Organism ID Go0000396
Organism Name
Halalkalicoccus jeotgali B3, DSM 18796  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Halalkalicoccus  
Genus Synonyms
  
Species
Halalkalicoccus jeotgali  
Subspecies
  
Species Synonyms
  
Strain
B3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18796  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11420  
Exemplar Name
Halalkalicoccus jeotgali  
Taxon DOI
10.1601/tx.11420  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 795797
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Halobacteriales  
NCBI Family
Halobacteriaceae  
NCBI Genus
Halalkalicoccus  
NCBI Species
Halalkalicoccus jeotgali  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EF077632
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Fish
Fermented food product
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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