PROJECT INFORMATION
GOLD Project ID
Gp0007226  
Project Name
Oscillochloris trichoides DG6  
Other Names
  
Legacy ER Project ID
17219  
Legacy GOLD ID
Gi06824  
NCBI BioProject Name Oscillochloris trichoides DG6
NCBI BioProject Accession PRJNA48647
NCBI Locus Tag
OSCT  
NCBI BioSample Accession SAMN02469416
Source Sample ID
PI Unknown
Added By Nikos Kyrpides on 2010-05-24
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center Russian Academy of Science, Centre Bioengineering (Russia)
Collaborating Institute
  
Funding Agency
  
Project Description
reen non-sulpur bacterium  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Journal of bacteriology: 193(1):321-2 Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides subsp. DG-6.
PubMed: 21037015 DOI: 10.1128/JB.00931-10
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Oscillochloris trichoides DG6
Organism Oscillochloris trichoides DG6
Analysis Projects Oscillochloris trichoides DG6
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0007226
Organism Name
Oscillochloris trichoides DG6  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXOTA  
Genus
Oscillochloris  
Genus Synonyms
  
Species
Oscillochloris trichoides  
Subspecies
  
Species Synonyms
  
Strain
DG6  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.565  
Exemplar Name
Oscillochloris trichoides  
Taxon DOI
10.1601/tx.565  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 765420
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexota  
NCBI Class
Chloroflexia  
NCBI Order
Chloroflexales  
NCBI Family
Oscillochloridaceae  
NCBI Genus
Oscillochloris  
NCBI Species
Oscillochloris trichoides  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Phototroph

 

 

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