Studies
|
49,592 |
|
Biosamples
|
132,357 |
|
Sequencing Projects
|
409,872 |
|
Analysis Projects
|
321,255 |
| Organisms | 410,919 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0007112
|
|
Project Name
|
Natrialba hulunbeirensis JCM 10989
|
|
Other Names
|
|
|
Legacy ER Project ID
|
16682
|
|
Legacy GOLD ID
|
Gi06156
|
| NCBI BioProject Name | Natrialba hulunbeirensis JCM 10989 |
|
NCBI BioProject ID
|
174932 |
|
NCBI BioProject Accession
|
PRJNA174932 |
|
NCBI Locus Tag
|
C483
|
|
NCBI BioSample Accession
|
SAMN02471673 |
| PI | Marc T. Facciotti |
| Added By |
Nikos Kyrpides
on 2010-02-15 |
| Last Modified By |
Hema Katta
on 2019-03-06 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Tree of Life Biotechnological |
|
Sequencing Center
|
University of California, Davis
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
National Science Foundation (NSF)
(USA)
|
|
Project Description
|
phylogenomics of halophilic archaea
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
International Journal of Systematic and Evolutionary Microbiology
51(Pt 5):1693-8
Natrialba hulunbeirensis sp. nov. and Natrialba chahannaoensis sp. nov., novel haloalkaliphilic archaea from soda lakes in Inner Mongolia Autonomous Region, China.
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Natrialba hulunbeirensis JCM 10989 |
| Organism |
Natrialba hulunbeirensis JCM 10989 |
| Analysis Projects |
Natrialba hulunbeirensis JCM 10989 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina GAIIx Illumina HiSeq 2000 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
62
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0007112 |
| Organism Name |
Natrialba hulunbeirensis JCM 10989
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
ARCHAEAL
|
| Phylogeny |
EURYARCHAEOTA-HALOBACTERIA
|
| Genus |
Natrialba
|
| Genus Synonyms |
|
| Species |
Natrialba hulunbeirensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
JCM 10989
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
JCM 10989
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.337
|
| Exemplar Name |
Natrialba hulunbeirensis
|
| Taxon DOI |
10.1601/tx.337
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1227493 |
| NCBI Superkingdom |
Archaea
|
| NCBI Kingdom |
|
| NCBI Phylum |
Euryarchaeota
|
| NCBI Class |
Halobacteria
|
| NCBI Order |
Natrialbales
|
| NCBI Family |
Natrialbaceae
|
| NCBI Genus |
Natrialba
|
| NCBI Species |
Natrialba hulunbeirensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Non-marine Saline and Alkaline
|
| Ecosystem Subtype |
Alkaline
|
| Specific Ecosystem |
Sediment
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AF262026 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
Halophile
|
| pH |
9
|
| Cell Diameter |
0.4 - 0.6 um
|
| Cell Length |
1.0 - 2.5 um
|
| Color |
Red
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Sediment Aquatic Fresh water |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Chemoorganotroph |
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