PROJECT NAME
GOLD Project ID
Gp0007023  
Project Name
Methylobacter tundripaludum SV96  
Other Names
  
Legacy ER Project ID
16731  
Legacy GOLD ID
Gi06207  
NCBI BioProject Name Methylobacter tundripaludum SV96
NCBI BioProject ID 48297
NCBI BioProject Accession
PRJNA48297  
NCBI Locus Tag
Mettu  
NCBI BioSample Accession
SAMN00102804  
PI Lisa Stein
Added By Nikos Kyrpides on 2010-02-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Methanol production
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylobacter tundripaludum SV96 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(22):6418-9 Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.
Other Publications
  
PROJECT COMPOSITION
Studies Whole Genome Sequencing of Methanotrophic Bacteria from Diverse Environments
Analysis Projects Methylobacter tundripaludum SV96
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0007023
Organism Name
Methylobacter tundripaludum SV96  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Methylobacter  
Genus Synonyms
  
Species
Methylobacter tundripaludum  
Subspecies
  
Species Synonyms
  
Strain
SV96  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17260  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9843  
Exemplar Name
Methylobacter tundripaludum  
Taxon DOI
10.1601/tx.9843  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 697282
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Methylococcales  
NCBI Family
Methylococcaceae  
NCBI Genus
Methylobacter  
NCBI Species
Methylobacter tundripaludum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ414655
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
23  
Salinity
  
pH
  
Cell Diameter
0.8-1.3um  
Cell Length
1.9-2.5um  
Color
Pink  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Soil
Wetland
Metabolisms
  
Phenotypes
  
Energy Sources Methylotroph

 

 

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