PROJECT NAME
GOLD Project ID
Gp0007021  
Project Name
Halobiforma nitratireducens JCM 10879  
Other Names
  
Legacy ER Project ID
16629  
Legacy GOLD ID
Gi06103  
NCBI BioProject Name Halobiforma nitratireducens JCM 10879
NCBI BioProject ID 174895
NCBI BioProject Accession
PRJNA174895  
NCBI Locus Tag
C446  
NCBI BioSample Accession
SAMN02471660  
PI Marc T. Facciotti
Added By Nikos Kyrpides on 2010-02-12 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Tree of Life
Sequencing Center University of California, Davis (USA)
Collaborating Institute
  
Funding Agency National Science Foundation (NSF) (USA)
Project Description
phylogenomics of halophilic archaea  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Halobiforma nitratireducens JCM 10879
Analysis Projects Halobiforma nitratireducens JCM 10879
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007021
Organism Name
Halobiforma nitratireducens JCM 10879  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Halobiforma  
Genus Synonyms
Natronobacterium  
Species
Halobiforma nitratireducens  
Subspecies
  
Species Synonyms
  
Strain
JCM 10879  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 10879  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.347  
Exemplar Name
Halobiforma nitratireducens  
Taxon DOI
10.1601/tx.298  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 130048
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Natrialbales  
NCBI Family
Natrialbaceae  
NCBI Genus
Halobiforma  
NCBI Species
Halobiforma nitratireducens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Alkaline  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB045012
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
8.5  
Cell Diameter
  
Cell Length
  
Color
Red  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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