PROJECT NAME
GOLD Project ID
Gp0006879  
Project Name
Gardnerella vaginalis 42431  
Other Names
  
Legacy ER Project ID
16849  
Legacy GOLD ID
Gi06326  
NCBI BioProject Name Gardnerella vaginalis 284V
NCBI BioProject ID 42431
NCBI BioProject Accession
PRJNA42431  
NCBI Locus Tag
CGSMWGV284V  
NCBI BioSample Accession
SAMN02393773  
PI
Added By Nikos Kyrpides on 2010-02-25
Last Modified By Auto script update processes on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Pathogen
Medical
Sequencing Center Allegheny-Singer Research Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
The most prevalent sexually transmitted organism and associated with bacterial vaginosis.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Gardnerella vaginalis strains- Allegheny-Singer Research Institute
Analysis Projects Gardnerella vaginalis 42431
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
41  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006879
Organism Name
Gardnerella vaginalis 42431  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Gardnerella  
Genus Synonyms
  
Species
Gardnerella vaginalis  
Subspecies
  
Species Synonyms
  
Strain
42431  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 698950
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Gardnerella  
NCBI Species
Gardnerella vaginalis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Bacterial vaginosis
Known Habitats Host
Vagina
Metabolisms
  
Phenotypes Fastidious
Energy Sources
  

 

 

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