PROJECT INFORMATION
GOLD Project ID
Gp0006704  
Project Name
Rhizobium tropici CIAT899  
Other Names
  
Legacy ER Project ID
558  
Legacy GOLD ID
Gi05744, Gc02473  
NCBI BioProject Name Rhizobium tropici CIAT 899
NCBI BioProject ID 42391
NCBI BioProject Accession PRJNA42391
NCBI Locus Tag
RTCIAT899  
NCBI BioSample Accession
PI Esperanza Martinez
Added By Konstantinos Liolios on 2009-12-17
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Root Nodulating Bacteria (RNB)
Agricultural
Sequencing Center National Autonomous University of Mexico (Mexico)
Collaborating Institute
  
Funding Agency
  
Project Description
isolated from a common bean nodule but has a broad legume host range  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Isolation
Database
  
Genome Publications BMC genomics 13(735):735 Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).
Other Publications
  
PROJECT COMPOSITION
Study Rhizobium tropici CIAT899
Organism Rhizobium tropici CIAT899
Analysis Projects Rhizobium tropici CIAT899
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
454
Library Method (MIGS-28)
Roche 454 GS-FLX shotgun and 3 kb-insert paired-end libraries  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0006704
Organism Name
Rhizobium tropici CIAT899  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhizobium  
Genus Synonyms
  
Species
Rhizobium tropici  
Subspecies
  
Species Synonyms
  
Strain
CIAT899  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
LMG 9503  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1306  
Exemplar Name
Rhizobium tropici  
Taxon DOI
10.1601/tx.1306  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 698761
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Rhizobium  
NCBI Species
Rhizobium tropici  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID U89832
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halotolerant  
pH
5 - 7  
Cell Diameter
0.5 - 0.7 um  
Cell Length
1.5 - 2.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic extracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Phaseolus vulgaris  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Root nodule
Host
Plant root
Metabolisms Nitrate reducer
Phenotypes
  
Energy Sources
  

 

 

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