PROJECT NAME
GOLD Project ID
Gp0006682  
Project Name
Agrobacterium vitis bv. III S4  
Other Names
  
Legacy ER Project ID
10822  
Legacy GOLD ID
Gi00021, Gc00943  
NCBI BioProject Name Agrobacterium vitis S4
NCBI BioProject ID 13372
NCBI BioProject Accession PRJNA13372
NCBI Locus Tag
Avi  
NCBI BioSample Accession SAMN02602976
PI Nester EW
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Plant Pathogen
Agricultural
Sequencing Center University of Washington (USA)
Collaborating Institute
  
Funding Agency National Science Foundation (NSF) (USA)
Project Description
Causes crown gall disease in grapes  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information MicrobeWiki
Taxonomy
Entrez
Database
  
Genome Publications Journal of bacteriology 191(8):2501-11 Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.
Other Publications
  
PROJECT COMPOSITION
Study Agrobacterium vitis S4
Analysis Projects Agrobacterium vitis bv. III S4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
Two DNA libraries (insert sizes, 2 to 4 kbp and 4 to 8 kbp)   
Number Of Reads
82000  
Read Size
  
Vector
pUC18  
GC Percent
57  
Chromosome Count
2  
Plasmid Count
5  
ORGANISM NAME
GOLD Organism ID Go0006682
Organism Name
Agrobacterium vitis bv. III S4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Agrobacterium  
Genus Synonyms
  
Species
Agrobacterium vitis  
Subspecies
  
Species Synonyms
  
Strain
S4  
Strain Synonyms
  
Serovar-Biovar
III  
Culture Collection ID
CFBP 2660  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 311402
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Agrobacterium  
NCBI Species
Agrobacterium vitis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 759566
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Crown gall
Known Habitats Root nodule
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the AP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?