PROJECT INFORMATION
GOLD Project ID
Gp0006670  
Project Name
Mageeibacillus indolicus UPII9-5  
Other Names
  
Legacy ER Project ID
555  
Legacy GOLD ID
Gi05738, Gc01216  
NCBI BioProject Name Mageeibacillus indolicus UPII9-5
NCBI BioProject Accession PRJNA42555
NCBI Locus Tag
HMPREF0868  
NCBI BioSample Accession SAMN00006219
PI Dodson R.
Added By Konstantinos Liolios on 2009-12-14
Last Modified By TBK Reddy on 2018-11-27
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Microbiome Project (HMP)
Comparative analysis
Medical
Sequencing Center J. Craig Venter Institute
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX014394  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HMP100-4F-01-665
Library Layout SINGLE
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Mageeibacillus indolicus UPII9-5
Analysis Projects Mageeibacillus indolicus UPII9-5
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
1122048  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006670
Organism Name
Mageeibacillus indolicus UPII9-5  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Mageeibacillus  
Genus Synonyms
  
Species
Mageeibacillus indolicus  
Subspecies
  
Species Synonyms
  
Strain
UPII9-5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 699246
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Oscillospiraceae  
NCBI Genus
Mageeibacillus  
NCBI Species
Mageeibacillus indolicus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Reproductive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
868  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-01-23  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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