PROJECT NAME
GOLD Project ID
Gp0006642  
Project Name
Mucilaginibacter paludis TPT56, DSM 18603  
Other Names
  
Legacy ER Project ID
15020  
Legacy GOLD ID
Gi04513  
NCBI BioProject Name Mucilaginibacter paludis DSM 18603
NCBI BioProject ID 43733
NCBI BioProject Accession
PRJNA43733  
NCBI Locus Tag
Mucpa  
NCBI BioSample Accession
SAMN02256535  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-07-11
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Bioenergy
Biotechnological
GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Mucilaginibacter paludis DSM 18603 whole genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Mucilaginibacter paludis TPT56, DSM 18603
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006642
Organism Name
Mucilaginibacter paludis TPT56, DSM 18603  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Mucilaginibacter  
Genus Synonyms
  
Species
Mucilaginibacter paludis  
Subspecies
  
Species Synonyms
  
Strain
TPT56, DSM 18603  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18603  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11436  
Exemplar Name
Mucilaginibacter paludis  
Taxon DOI
10.1601/tx.11436  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 714943
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Sphingobacteriia  
NCBI Order
Sphingobacteriales  
NCBI Family
Sphingobacteriaceae  
NCBI Genus
Mucilaginibacter  
NCBI Species
Mucilaginibacter paludis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AM490402
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Psychrotolerant  
Temperature Optimum
20  
Salinity
  
pH
4.2 - 8.2  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Bog
Wetland
Metabolisms Xylan degrader
Phenotypes
  
Energy Sources Heterotroph

 

 

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