PROJECT NAME
GOLD Project ID
Gp0006614  
Project Name
Succinatimonas hippei YIT 12066  
Other Names
  
Legacy ER Project ID
577  
Legacy GOLD ID
Gi05926  
NCBI BioProject Name Succinatimonas hippei YIT 12066
NCBI BioProject ID 48507
NCBI BioProject Accession PRJNA48507
NCBI Locus Tag
HMPREF9444  
NCBI BioSample Accession SAMN00189159
PI Fulton L
Added By Nikos Kyrpides on 2010-01-30
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information HMP
Isolation
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Succinatimonas hippei YIT 12066
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006614
Organism Name
Succinatimonas hippei YIT 12066  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Succinatimonas  
Genus Synonyms
  
Species
Succinatimonas hippei  
Subspecies
  
Species Synonyms
  
Strain
YIT 12066  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22608  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.19995  
Exemplar Name
Succinatimonas hippei  
Taxon DOI
10.1601/tx.19995  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 762983
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Aeromonadales  
NCBI Family
Succinivibrionaceae  
NCBI Genus
Succinatimonas  
NCBI Species
Succinatimonas hippei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Human intestinal microflora
Host
Gastrointestinal tract
Feces
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9444  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-04-27  
Date Sequencing Begins
2010-09-29  
Date Draft Sequencing Completed
2010-11-11  
Cross Reference ID
  

 

 

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