PROJECT INFORMATION
GOLD Project ID
Gp0006602  
Project Name
Nodosilinea nodulosa PCC 7104  
Other Names
  
Legacy ER Project ID
14834  
Legacy GOLD ID
Gi04312  
NCBI BioProject Name Nodosilinea nodulosa PCC 7104
NCBI BioProject ID 62311
NCBI BioProject Accession PRJNA62311
NCBI Locus Tag
Lepto7104  
NCBI BioSample Accession SAMN02261265
PI Cheryl Kerfeld
Added By Cheryl Kerfeld on 2009-05-08
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-PCC
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Leptolyngbya sp. PCC 7104 genome sequencing  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(3):1053-8 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study GEBA-PCC
Organism Nodosilinea nodulosa PCC 7104
Analysis Projects Nodosilinea nodulosa PCC 7104
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006602
Organism Name
Nodosilinea nodulosa PCC 7104  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Nodosilinea  
Genus Synonyms
  
Species
Nodosilinea nodulosa  
Subspecies
  
Species Synonyms
  
Strain
PCC 7104  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
PCC 7104  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 118166
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Prochlorotrichaceae  
NCBI Genus
Nodosilinea  
NCBI Species
Nodosilinea nodulosa  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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