PROJECT NAME
GOLD Project ID
Gp0006550  
Project Name
Stygiolobus azoricus FC6, DSM 6296  
Other Names
  
Legacy ER Project ID
13521  
Legacy GOLD ID
Gi02940  
NCBI BioProject Name Stygiolobus azoricus DSM 6296
NCBI BioProject ID 195775
NCBI BioProject Accession
PRJNA195775  
NCBI Locus Tag
K308  
NCBI BioSample Accession
SAMN02440579  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2008-01-19
Last Modified By JGI automated process on 2014-07-17
Project Comments
We did not sequence this organism. We submitted a genome with this name to NCBI and to genbank but it was not the correct organism. Therefore, we reverted this project to abandoned and requested deletion of the Genbank and Bioproject IDs from NCBI  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Continuation of the Genomic Encyclopedia of Bacteria and Archaea pilot project (GEBA)
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular LMP, 8kb, CLRS; Illumina Regular Fragment, 270bp  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006550
Organism Name
Stygiolobus azoricus FC6, DSM 6296  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
Stygiolobus  
Genus Synonyms
  
Species
Stygiolobus azoricus  
Subspecies
  
Species Synonyms
  
Strain
FC6  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 6296  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.84  
Exemplar Name
Stygiolobus azoricus  
Taxon DOI
10.1601/tx.84  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1313299
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Sulfolobales  
NCBI Family
Sulfolobaceae  
NCBI Genus
Stygiolobus  
NCBI Species
Stygiolobus azoricus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Hot (42-90C)  
Specific Ecosystem
Acidic  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D85520
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
72-80C  
Temperature Optimum
80  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Hot spring
Metabolisms Sulfur reducer
Phenotypes Acidophile
Energy Sources Chemolithoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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