PROJECT NAME
GOLD Project ID
Gp0006536  
Project Name
Syntrophorhabdus aromaticivorans UI  
Other Names
  
Legacy ER Project ID
565  
Legacy GOLD ID
Gi05848  
NCBI BioProject Name Syntrophorhabdus aromaticivorans UI
NCBI BioProject ID 63195
NCBI BioProject Accession
PRJNA63195  
NCBI Locus Tag
Synar  
NCBI BioSample Accession
SAMN02597160  
PI Wen-Tso Liu
Added By Nikos Kyrpides on 2010-01-03 00:00:00.0
Last Modified By Auto script update processes on 2014-08-18 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Syntrophorhabdus aromaticivorans UI genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genome sequencing of obligate syntrophic bacteria capable of phthalate isomer compound degradation in methanogenic conditions
Analysis Projects Syntrophorhabdus aromaticivorans UI
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006536
Organism Name
Syntrophorhabdus aromaticivorans UI  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Syntrophorhabdus  
Genus Synonyms
  
Species
Syntrophorhabdus aromaticivorans  
Subspecies
  
Species Synonyms
  
Strain
UI  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17771  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13785  
Exemplar Name
Syntrophorhabdus aromaticivorans  
Taxon DOI
10.1601/tx.13785  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 909663
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Syntrophobacterales  
NCBI Family
Syntrophorhabdaceae  
NCBI Genus
Syntrophorhabdus  
NCBI Species
Syntrophorhabdus aromaticivorans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB212873
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Methanospirillum hungatei  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sludge
Wastewater
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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