PROJECT INFORMATION
GOLD Project ID
Gp0006524  
Project Name
Ailuropoda melanoleuca  
Other Names
  
Legacy ER Project ID
68  
Legacy GOLD ID
Gi03044  
NCBI BioProject Name Ailuropoda melanoleuca
NCBI BioProject Accession PRJNA38683
NCBI Locus Tag
PANDA  
NCBI BioSample Accession SAMN00008160
PI
Added By Nikos Kyrpides on 2008-03-11
Last Modified By Nikos Kyrpides on 2009-10-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Beijing Genomics Institute (BGI) (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Giant panda genome sequencing project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Nature 463(7279):311-7 The sequence and de novo assembly of the giant panda genome.

Other Publications
  
Ignored Publications
  
Unassigned Publications Nucleic acids research 25(5):955-64 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Gene 397(1-2):76-83 The complete mitochondrial genome and phylogenetic analysis of the giant panda (Ailuropoda melanoleuca).

SRA Experiment
 
SRA Experiment Id SRX007019  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADWAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007018  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADICAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007017  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADIBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007012  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADKAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007011  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADHAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007010  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADHDAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007016  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADIAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007015  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADICCPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007014  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADICBPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007013  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADICAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007009  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADHCAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006998  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADCBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006997  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADDCAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007008  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADJCAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007007  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADFCAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007029  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADTAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006996  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADBDAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006995  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADCAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007006  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADCEAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007028  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADTBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006999  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADBGAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007001  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADDAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007023  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADWDAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007022  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADLAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007000  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADBDBPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007021  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADWCAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007020  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADWBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007027  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADTCAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006994  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADADAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007005  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADCFAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007026  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADSBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007004  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDAADBAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX006993  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADAGAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007003  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADBEAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007025  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADLBAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007024  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADSAAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
 
SRA Experiment Id SRX007002  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PAfwDADBFAPE
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
PROJECT COMPOSITION
Study Ailuropoda melanoleuca
Organism Ailuropoda melanoleuca
Analysis Projects Ailuropoda melanoleuca
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006524
Organism Name
Ailuropoda melanoleuca  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Ailuropoda  
Genus Synonyms
  
Species
Ailuropoda melanoleuca  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9646
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Carnivora  
NCBI Family
Ursidae  
NCBI Genus
Ailuropoda  
NCBI Species
Ailuropoda melanoleuca  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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