PROJECT NAME
GOLD Project ID
Gp0006452  
Project Name
Gardnerella vaginalis 315-A  
Other Names
  
Legacy ER Project ID
16413  
Legacy GOLD ID
Gi05859  
NCBI BioProject Name Gardnerella vaginalis 315-A
NCBI BioProject ID 52049
NCBI BioProject Accession
PRJNA52049  
NCBI Locus Tag
HMPREF9435  
NCBI BioSample Accession
SAMN00138210  
PI Dodson R.
Added By Konstantinos Liolios on 2010-01-11
Last Modified By Auto script update processes on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute J. Craig Venter Institute (JCVI) (USA)
Commonwealth Scientific and Industrial Research Organisation (CSIRO) (Australia)
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
J. Craig Venter Institute
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Gardnerella vaginalis 315-A
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
183218   
Read Size
  
Vector
  
GC Percent
41  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006452
Organism Name
Gardnerella vaginalis 315-A  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Gardnerella  
Genus Synonyms
  
Species
Gardnerella vaginalis  
Subspecies
  
Species Synonyms
  
Strain
315-A  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-133  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 879307
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Gardnerella  
NCBI Species
Gardnerella vaginalis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Reproductive system  
Ecosystem Subtype
Vagina  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Bacterial vaginosis
Known Habitats Host
Vagina
Metabolisms
  
Phenotypes Fastidious
Energy Sources
  
HMP METADATA
HMP ID
9435  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Hillier  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-02-17  
Date Sequencing Begins
2010-09-09  
Date Draft Sequencing Completed
2010-11-10  
Cross Reference ID
HOMD: tax_829  

 

 

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