PROJECT NAME
GOLD Project ID
Gp0006420  
Project Name
Helicobacter suis HS1  
Other Names
  
Legacy ER Project ID
574  
Legacy GOLD ID
Gi05912  
NCBI BioProject Name Helicobacter suis HS1
NCBI BioProject ID 43415
NCBI BioProject Accession
PRJNA43415  
NCBI Locus Tag
HSUHS1  
NCBI BioSample Accession
SAMN02469776  
PI
Added By Nikos Kyrpides on 2010-01-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Animal Pathogen
Medical
Sequencing Center
  
Collaborating Institute Ghent University (Belgium)
Funding Agency
  
Project Description
gastric porcine pathogen, with a concomitant zoonotic importance  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Veterinary research 42(1):51 Genome sequence of Helicobacter suis supports its role in gastric pathology.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Helicobacter suis HS1
Analysis Projects Helicobacter suis HS1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006420
Organism Name
Helicobacter suis HS1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Helicobacter  
Genus Synonyms
  
Species
Helicobacter suis  
Subspecies
  
Species Synonyms
  
Strain
HS1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 19735  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13365  
Exemplar Name
Helicobacter suis  
Taxon DOI
10.1601/tx.13365  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 710393
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Helicobacter  
NCBI Species
Helicobacter suis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EF204589
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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