PROJECT INFORMATION
GOLD Project ID
Gp0006419  
Project Name
Pseudoalteromonas sp. SM9913  
Other Names
  
Legacy ER Project ID
16303  
Legacy GOLD ID
Gi05747, Gc01563  
NCBI BioProject Name Pseudoalteromonas sp. SM9913
NCBI BioProject ID 39311
NCBI BioProject Accession PRJNA39311
NCBI Locus Tag
PSM  
NCBI BioSample Accession
PI Yu-Zhong Zhang
Added By Konstantinos Liolios on 2009-12-17
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Ecological
Sequencing Center Nankai University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudoalteromonas sp. SM9913 is a deep-sea cold-adapted bacterium.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications The ISME journal 5(2):274-84 Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913.
Other Publications
  
PROJECT COMPOSITION
Study Pseudoalteromonas project - Shandong University
Organism Pseudoalteromonas sp. SM9913
Analysis Projects Pseudoalteromonas sp. SM9913
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Sanger
Library Method (MIGS-28)
insert sizes of 3?5 and 40 kb  
Number Of Reads
11100  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006419
Organism Name
Pseudoalteromonas sp. SM9913  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudoalteromonas  
Genus Synonyms
  
Species
Pseudoalteromonas sp. SM9913  
Subspecies
  
Species Synonyms
  
Strain
SM9913  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 234831
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Pseudoalteromonadaceae  
NCBI Genus
Pseudoalteromonas  
NCBI Species
Pseudoalteromonas sp. SM9913  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrotolerant  
Temperature Optimum
15C  
Salinity
Halotolerant  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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