PROJECT NAME
GOLD Project ID
Gp0006350  
Project Name
Treponema saccharophilum PB, DSM 2985  
Other Names
  
Legacy ER Project ID
15930  
Legacy GOLD ID
Gi05359  
NCBI BioProject Name Treponema saccharophilum DSM 2985
NCBI BioProject ID 53931
NCBI BioProject Accession
PRJNA53931  
NCBI Locus Tag
Tresa  
NCBI BioSample Accession
SAMN02261376  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-09-28
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, Davis (USA)
Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Treponema saccharophilum DSM 2985 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Treponema saccharophilum PB, DSM 2985
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
2  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0006350
Organism Name
Treponema saccharophilum PB, DSM 2985  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Treponema  
Genus Synonyms
  
Species
Treponema saccharophilum  
Subspecies
  
Species Synonyms
  
Strain
PB, DSM 2985  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2985  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7873  
Exemplar Name
Treponema saccharophilum  
Taxon DOI
10.1601/tx.7873  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 907348
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Spirochaetaceae  
NCBI Genus
Treponema  
NCBI Species
Treponema saccharophilum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Foregut  
Specific Ecosystem
Rumen  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M71238
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Helical-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.6 - 0.7 um  
Cell Length
12 - 20 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Bovine
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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