PROJECT INFORMATION
GOLD Project ID
Gp0006179  
Project Name
Roseibium alexandrii DFL-11  
Other Names
  
Legacy ER Project ID
11203  
Legacy GOLD ID
Gi01459  
NCBI BioProject Name Roseibium alexandrii DFL-11
NCBI BioProject Accession PRJNA19367
NCBI Locus Tag
SADFL11  
NCBI BioSample Accession SAMN02436266
PI Irene Wagner-Doebler
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Mahathi Kandimalla on 2022-01-25
Project Comments
  
Project Status
Complete and Published  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute
Collaborating Institute Helmholtz Centre for Infection Research (Germany)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Strains 1 aa??a?? 4 belong in the Roseobacter clade with closest cultivated relatives of the uncultured marine SAR83 lineage. Strains 5 and 6 are aerobic anoxygenic phototrophs belonging into other lineages of the Alphaproteobacteria.

These strains:
- ability to produce longchain acylated homoserine lacton quorum sensing signaling molecules (strains 1,2,3,4 and 5)
- ability to produce various interesting secondary metabolites or volatile compounds (strains 3 amd 4)
- association with dinoflagellate cells (strains 1,2, 5 and 6).

The source of strains 1,2,5 and 6 are single cells of the toxic dinoflagellates Alexandrium ostenfeldii and Prorocentrum lima, respectively.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Standards in genomic sciences 7(3):413-26 Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11(T)).

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Roseibium alexandrii DFL-11
Organism Roseibium alexandrii DFL-11
Analysis Projects Roseibium alexandrii DFL-11
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006179
Organism Name
Roseibium alexandrii DFL-11  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseibium  
Genus Synonyms
Stappia  
Species
Roseibium alexandrii  
Subspecies
  
Species Synonyms
  
Strain
DFL-11  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17067  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10794  
Exemplar Name
Labrenzia alexandrii  
Taxon DOI
10.1601/tx.10794  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 244592
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Hyphomicrobiales  
NCBI Family
Stappiaceae  
NCBI Genus
Roseibium  
NCBI Species
Roseibium alexandrii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ582083
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
6  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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