| PROJECT NAME | |
|---|---|
GOLD Project ID
|
Gp0006179
|
|
Project Name
|
Labrenzia alexandrii DFL-11
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11203
|
|
Legacy GOLD ID
|
Gi01459
|
| NCBI BioProject Name | Labrenzia alexandrii DFL-11 |
|
NCBI BioProject ID
|
19367 |
|
NCBI BioProject Accession
|
PRJNA19367 |
|
NCBI Locus Tag
|
SADFL11
|
|
NCBI BioSample Accession
|
SAMN02436266 |
| PI | Irene Wagner-Doebler |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| PROJECT INFORMATION | |
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Environmental Marine Microbial Initiative (MMI) |
|
Sequencing Center
|
J. Craig Venter Institute (JCVI)
(USA)
|
|
Collaborating Institute
|
Helmholtz Centre for Infection Research
(Germany)
|
|
Funding Agency
|
Gordon and Betty Moore Foundation Marine Microbiology Initiative
(USA)
|
|
Project Description
|
Strains 1 aa??a?? 4 belong in the Roseobacter clade with closest cultivated relatives of the uncultured marine SAR83 lineage. Strains 5 and 6 are aerobic anoxygenic phototrophs belonging into other lineages of the Alphaproteobacteria.
These strains: - ability to produce longchain acylated homoserine lacton quorum sensing signaling molecules (strains 1,2,3,4 and 5) - ability to produce various interesting secondary metabolites or volatile compounds (strains 3 amd 4) - association with dinoflagellate cells (strains 1,2, 5 and 6). The source of strains 1,2,5 and 6 are single cells of the toxic dinoflagellates Alexandrium ostenfeldii and Prorocentrum lima, respectively. |
|
Project Information Visibility
|
Public
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
Isolation Entrez Taxonomy Information |
|
Database
|
|
|
Genome Publications
|
Standards in genomic sciences
7(3):413-26
Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11(T)).
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Labrenzia alexandrii DFL-11 |
| Analysis Projects |
Labrenzia alexandrii DFL-11 |
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
|
Sequencing Quality
(MIGS-31)
|
Level 1: Standard Draft |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
56
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0006179 |
| Organism Name |
Labrenzia alexandrii DFL-11
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Labrenzia
|
| Genus Synonyms |
Stappia
|
| Species |
Labrenzia alexandrii
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DFL-11
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 17067
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.10794
|
| Exemplar Name |
Labrenzia alexandrii
|
| Taxon DOI |
10.1601/tx.10794
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
244592 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Rhodobacterales
|
| NCBI Family |
Rhodobacteraceae
|
| NCBI Genus |
Labrenzia
|
| NCBI Species |
Labrenzia alexandrii
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Microbial
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AJ582083 |
| Synonym List |
|
| GENERAL PROPERTIES | |||||
|---|---|---|---|---|---|
| Oxygen Requirement |
Aerobe
|
||||
| Cell Shape |
Rod-shaped
|
||||
| Motility |
Motile
|
||||
| Sporulation |
Nonsporulating
|
||||
| Temperature Range |
Mesophile
|
||||
| Temperature Optimum |
26
|
||||
| Salinity |
|
||||
| pH |
6 - 9.2
|
||||
| Cell Diameter |
|
||||
| Cell Length |
|
||||
| Color |
|
||||
| Gram Staining |
Gram-
|
||||
| Biotic Relationships |
|
||||
| Symbiotic Physical Interaction |
|
||||
| Symbiotic Relationship |
|
||||
| Symbiont Name |
|
||||
| Symbiont Taxon ID |
|
||||
| Cell Arrangements |
|
||||
| Diseases |
None |
||||
| Known Habitats |
Host Marine |
||||
| Metabolisms |
|
||||
| Phenotypes |
|
||||
| Energy Sources |
|
||||
| CYANOBACTERIA METADATA | |||||
| Filaments |
|
||||
| Filament Type |
|
||||
| Differentiated Cells |
|
||||
| Position Of Heterocysts |
|
||||
| Cysts |
|
||||
| Mode Of Reproduction |
|
||||
| Trichome |
|
||||
| Trichome Type |
|
||||
| Carotenoids |
|
||||
| Pigments |
|
||||
| Phage Infectivity |
|
||||
| Phage Type |
|
||||
| Restriction Enzyme |
|
||||
| Toxin Production |
|
||||
| Toxin Type |
|
||||
| Secondary Metabolites |
|
||||
| Developmental Cycle |
|
||||
| Branching |
|
||||
| Gas Vesicles |
|
||||
| Gas Vesicle Type |
|
||||
| Diagnostic Inclusion Body Information |
|
||||
| Extracellular Structures |
|
||||
| Bloom Forming |
|
||||
| Pigment Type |
|
||||
| Complementary chromatic adaptation (CCA) |
|
||||
| Medium Types |
|
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