PROJECT NAME
GOLD Project ID
Gp0006179  
Project Name
Labrenzia alexandrii DFL-11  
Other Names
  
Legacy ER Project ID
11203  
Legacy GOLD ID
Gi01459  
NCBI BioProject Name Labrenzia alexandrii DFL-11
NCBI BioProject ID 19367
NCBI BioProject Accession
PRJNA19367  
NCBI Locus Tag
SADFL11  
NCBI BioSample Accession
SAMN02436266  
PI Irene Wagner-Doebler
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute Helmholtz Centre for Infection Research (Germany)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Strains 1 aa??a?? 4 belong in the Roseobacter clade with closest cultivated relatives of the uncultured marine SAR83 lineage. Strains 5 and 6 are aerobic anoxygenic phototrophs belonging into other lineages of the Alphaproteobacteria.

These strains:
- ability to produce longchain acylated homoserine lacton quorum sensing signaling molecules (strains 1,2,3,4 and 5)
- ability to produce various interesting secondary metabolites or volatile compounds (strains 3 amd 4)
- association with dinoflagellate cells (strains 1,2, 5 and 6).

The source of strains 1,2,5 and 6 are single cells of the toxic dinoflagellates Alexandrium ostenfeldii and Prorocentrum lima, respectively.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Entrez
Taxonomy
Information
Database
  
Genome Publications Standards in genomic sciences 7(3):413-26 Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11(T)).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Labrenzia alexandrii DFL-11
Analysis Projects Labrenzia alexandrii DFL-11
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006179
Organism Name
Labrenzia alexandrii DFL-11  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Labrenzia  
Genus Synonyms
Stappia  
Species
Labrenzia alexandrii  
Subspecies
  
Species Synonyms
  
Strain
DFL-11  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17067  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10794  
Exemplar Name
Labrenzia alexandrii  
Taxon DOI
10.1601/tx.10794  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 244592
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Labrenzia  
NCBI Species
Labrenzia alexandrii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ582083
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
26  
Salinity
  
pH
6 - 9.2  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?