PROJECT INFORMATION
GOLD Project ID
Gp0006178  
Project Name
Roseibium aggregatum IAM 12614  
Other Names
  
Legacy ER Project ID
11204  
Legacy GOLD ID
Gi01460  
NCBI BioProject Name Roseibium aggregatum IAM 12614
NCBI BioProject Accession PRJNA18315
NCBI Locus Tag
SIAM  
NCBI BioSample Accession SAMN02436089
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Mahathi Kandimalla on 2022-01-24
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute
Collaborating Institute University of Maine
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
ubiquitous carbon monoide oxidizing bacterium associated with marine invertebrates, marine algae and macrophytes, water column and sediments; metabolizes aromatic compounds; produces toxins  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications Applied and environmental microbiology 66(9):3924-30 Additional evidence that juvenile oyster disease is caused by a member of the Roseobacter group and colonization of nonaffected animals by Stappia stellulata-like strains.

International journal of systematic bacteriology 42(1):133-43 Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev.

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Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Roseibium aggregatum IAM 12614
Organism Roseibium aggregatum IAM 12614
Analysis Projects Roseibium aggregatum IAM 12614
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006178
Organism Name
Roseibium aggregatum IAM 12614  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseibium  
Genus Synonyms
Stappia  
Species
Roseibium aggregatum  
Subspecies
  
Species Synonyms
  
Strain
IAM 12614  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 25650  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1157  
Exemplar Name
Labrenzia aggregata  
Taxon DOI
10.1601/tx.10792  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 384765
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Hyphomicrobiales  
NCBI Family
Stappiaceae  
NCBI Genus
Roseibium  
NCBI Species
Roseibium aggregatum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D88520
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
0.6–1.0 µm  
Cell Length
2–4 µm  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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