PROJECT NAME
GOLD Project ID
Gp0006167  
Project Name
Thioalkalimicrobium cyclicum ALM1, DSM 14477  
Other Names
  
Legacy ER Project ID
475  
Legacy GOLD ID
Gi05326, Gc01777  
NCBI BioProject Name Thioalkalimicrobium cyclicum ALM1
NCBI BioProject ID 52629
NCBI BioProject Accession
PRJNA52629  
NCBI Locus Tag
Thicy  
NCBI BioSample Accession
SAMN02232061  
PI Ulrike Kappler
Added By Nikos Kyrpides on 2009-09-23
Last Modified By Nikos Kyrpides on 2014-10-22
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Thioalkalimicrobium cyclicum ALM1 genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Remediation of sulfur pollution- sequencing of the genomes of alkaliphilic sulfur oxidizing bacteria
Analysis Projects Thioalkalimicrobium cyclicum ALM1, DSM 14477
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006167
Organism Name
Thioalkalimicrobium cyclicum ALM1, DSM 14477  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Thioalkalimicrobium  
Genus Synonyms
  
Species
Thioalkalimicrobium cyclicum  
Subspecies
  
Species Synonyms
  
Strain
ALM1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14477  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2325  
Exemplar Name
Thialkalimicrobium cyclicum  
Taxon DOI
10.1601/tx.2325  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 717773
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Thiotrichales  
NCBI Family
Piscirickettsiaceae  
NCBI Genus
Thioalkalimicrobium  
NCBI Species
Thioalkalimicrobium cyclicum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Hypersaline  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF329082
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Open-ring-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.5-0.8um  
Cell Length
0.3-0.4um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Fresh water
Metabolisms Sulfur oxidizer
Phenotypes Alkaliphile
Energy Sources Chemolithoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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