PROJECT NAME
GOLD Project ID
Gp0006072  
Project Name
Slackia heliotrinireducens RHS 1, DSM 20476  
Other Names
  
Legacy ER Project ID
11833  
Legacy GOLD ID
Gi02157, Gc01094  
NCBI BioProject Name Slackia heliotrinireducens DSM 20476
NCBI BioProject ID 20831
NCBI BioProject Accession
PRJNA20831  
NCBI Locus Tag
Shel  
NCBI BioSample Accession
SAMN02598438  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Medical
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Alkaloid-degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
GEBA
Database
  
Genome Publications Standards in genomic sciences 1(3):234-41 Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Slackia heliotrinireducens RHS 1, DSM 20476
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Sanger
Library Method (MIGS-28)
8Kb, fosmid, 454  
Number Of Reads
21045 Sanger, 205234 pyrosequence  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006072
Organism Name
Slackia heliotrinireducens RHS 1, DSM 20476  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Slackia  
Genus Synonyms
  
Species
Slackia heliotrinireducens  
Subspecies
  
Species Synonyms
  
Strain
RHS 1, DSM 20476  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20476  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4308  
Exemplar Name
Slackia heliotrinireducens  
Taxon DOI
10.1601/tx.5760  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 471855
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Coriobacteriia  
NCBI Order
Eggerthellales  
NCBI Family
Eggerthellaceae  
NCBI Genus
Slackia  
NCBI Species
Slackia heliotrinireducens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Foregut  
Specific Ecosystem
Rumen  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 106534
Genbank 16S ID AF101241
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
38 - 42  
Salinity
  
pH
  
Cell Diameter
0.3 - 0.6 um  
Cell Length
0.8 1.2 um  
Color
White  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Metabolisms Pyrrolizidine alkaloids metabolizer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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