PROJECT INFORMATION
GOLD Project ID
Gp0005858  
Project Name
Sphaerobacter thermophilus 4ac11, DSM 20745  
Other Names
  
Legacy ER Project ID
11104  
Legacy GOLD ID
Gi02236, Gc01151  
NCBI BioProject Name Sphaerobacter thermophilus DSM 20745
NCBI BioProject ID 21087
NCBI BioProject Accession PRJNA21087
NCBI Locus Tag
Sthe  
NCBI BioSample Accession SAMN02598446
PI Jonathan Eisen
Added By JGI automated process on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Sewage sludge bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Wikipedia
Database
  
Genome Publications Standards in genomic sciences 2(1):49-56 Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022).
Other Publications
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Sphaerobacter thermophilus 4ac11, DSM 20745
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Illumina
454
Library Method (MIGS-28)
8Kb, fosmid, 454, Illumina  
Number Of Reads
35091 Sanger, 516954 pyrosequence  
Read Size
  
Vector
pMCL200, pcc1Fos, 454  
GC Percent
68  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0005858
Organism Name
Sphaerobacter thermophilus 4ac11, DSM 20745  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Sphaerobacter  
Genus Synonyms
  
Species
Sphaerobacter thermophilus  
Subspecies
  
Species Synonyms
  
Strain
4ac11, DSM 20745  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20745  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5766  
Exemplar Name
Sphaerobacter thermophilus  
Taxon DOI
10.1601/tx.5766  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 479434
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Thermomicrobia  
NCBI Order
Sphaerobacterales  
NCBI Family
Sphaerobacteraceae  
NCBI Genus
Sphaerobacter  
NCBI Species
Sphaerobacter thermophilus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 157716
Genbank 16S ID AJ420142
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
55  
Salinity
  
pH
8.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sludge
Wastewater
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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