PROJECT NAME
GOLD Project ID
Gp0005857  
Project Name
Desulfotomaculum acetoxidans 5575, DSM 771  
Other Names
  
Legacy ER Project ID
11107  
Legacy GOLD ID
Gi02239, Gc01106  
NCBI BioProject Name Desulfotomaculum acetoxidans DSM 771
NCBI BioProject ID 27947
NCBI BioProject Accession
PRJNA27947  
NCBI Locus Tag
Dtox  
NCBI BioSample Accession
SAMN02598455  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Acetate-oxidizing bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
GEBA
Wikipedia
Database
  
Genome Publications Standards in genomic sciences 1(3):242-53 Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Desulfotomaculum acetoxidans 5575, DSM 771
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
8Kb, Fosmid  
Number Of Reads
46,605  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0005857
Organism Name
Desulfotomaculum acetoxidans 5575, DSM 771  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Desulfotomaculum  
Genus Synonyms
  
Species
Desulfotomaculum acetoxidans  
Subspecies
  
Species Synonyms
  
Strain
5575, DSM 771  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 771  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4331  
Exemplar Name
Desulfotomaculum acetoxidans  
Taxon DOI
10.1601/tx.4331  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 485916
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Peptococcaceae  
NCBI Genus
Desulfotomaculum  
NCBI Species
Desulfotomaculum acetoxidans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Solid waste  
Ecosystem Type
Solid animal waste  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 113915
Genbank 16S ID Y11566
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
36  
Salinity
  
pH
7 - 7.2  
Cell Diameter
1.0-1.5 um  
Cell Length
3.5-9.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Animal manure
Metabolisms Hydrogen sulfide gas release
Sulfate reducer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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