Studies
|
54,177 |
|
Biosamples
|
180,982 |
|
Sequencing Projects
|
492,102 |
|
Analysis Projects
|
368,747 |
| Organisms | 468,147 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
|
Gp0005743
|
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Project Name
|
Desmospora sp. 8437
|
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Other Names
|
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Legacy ER Project ID
|
16178
|
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Legacy GOLD ID
|
Gi05605
|
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| NCBI BioProject Name | Desmospora sp. 8437 | ||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA64725 |
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NCBI Locus Tag
|
HMPREF9374
|
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NCBI BioSample Accession
|
SAMN00259688 |
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| PI | BCM-HGSC | ||||||||||||||||||
| Added By | Konstantinos Liolios on 2009-11-18 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2014-03-26 | ||||||||||||||||||
| Project Comments |
|
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Project Status
|
Permanent Draft
|
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Project Relevance
|
Human Microbiome Project (HMP) Medical |
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Sequencing Center
|
Baylor College of Medicine
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Collaborating Institute
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Funding Agency
|
NIH
(USA)
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Project Description
|
Reference genome for the Human Microbiome Project
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| Is JGI Project |
No
|
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Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
|
Specimen
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Organism |
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Nucleic Acid
|
DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
|
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Human Microbiome Project (HMP) Reference Genomes |
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| Organism |
Desmospora sp. 8437 |
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| Analysis Projects |
Desmospora sp. 8437 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
|
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
|
Finishing Goal
|
Level 2: High-Quality Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
454 |
|
Library Method
(MIGS-28)
|
454 Paired-end
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
194733
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
54
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0005743 |
| Organism Name |
Desmospora sp. 8437
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Desmospora
|
| Genus Synonyms |
|
| Species |
Desmospora sp. 8437
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
8437
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
BEI HM-333
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
997346 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Bacillales
|
| NCBI Family |
Thermoactinomycetaceae
|
| NCBI Genus |
Desmospora
|
| NCBI Species |
Desmospora sp. 8437
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| HMP METADATA | |
|---|---|
| HMP ID |
9374
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Blood
|
| HMP Isolation Body Sample Subsite |
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
Kimberlee Musser
|
| Project Comments |
|
| DNA Received |
Yes
|
| Date DNA Received |
2011-02-03
|
| Date Sequencing Begins |
2010-12-20
|
| Date Draft Sequencing Completed |
2011-03-18
|
| Cross Reference ID |
|
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