PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0005743
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Project Name
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Desmospora sp. 8437
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Other Names
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Legacy ER Project ID
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16178
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Legacy GOLD ID
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Gi05605
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NCBI BioProject Name | Desmospora sp. 8437 | ||||||||||||||||||
NCBI BioProject Accession
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PRJNA64725 |
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NCBI Locus Tag
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HMPREF9374
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NCBI BioSample Accession
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SAMN00259688 |
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PI | BCM-HGSC | ||||||||||||||||||
Added By |
Konstantinos Liolios
on 2009-11-18 |
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Last Modified By |
JGI automated process
on 2014-03-26 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Human Microbiome Project (HMP) Medical |
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Sequencing Center
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Baylor College of Medicine
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Collaborating Institute
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Funding Agency
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NIH
(USA)
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Project Description
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Reference genome for the Human Microbiome Project
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||
Study |
Human Microbiome Project (HMP) Reference Genomes |
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Organism |
Desmospora sp. 8437 |
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Analysis Projects |
Desmospora sp. 8437 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
Finishing Goal
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Level 2: High-Quality Draft |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 |
Library Method
(MIGS-28)
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454 Paired-end
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Library Layout
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Library Screening Method
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Number Of Reads
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194733
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Read Size
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Vector
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GC Percent |
54
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0005743 |
Organism Name |
Desmospora sp. 8437
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
FIRMICUTES
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Genus |
Desmospora
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Genus Synonyms |
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Species |
Desmospora sp. 8437
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Subspecies |
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Species Synonyms |
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Strain |
8437
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
BEI HM-333
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Type Strain |
Unknown
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Exemplar DOI |
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Exemplar Name |
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Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
997346 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Firmicutes
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NCBI Class |
Bacilli
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NCBI Order |
Bacillales
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NCBI Family |
Thermoactinomycetaceae
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NCBI Genus |
Desmospora
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NCBI Species |
Desmospora sp. 8437
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ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Mammals: Human
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Ecosystem Type |
Unclassified
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Ecosystem Subtype |
Unclassified
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Specific Ecosystem |
Unclassified
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram+
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
Host |
Metabolisms |
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Phenotypes |
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Energy Sources |
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HMP METADATA | |
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HMP ID |
9374
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Show in DACC? |
Yes
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HMP Project Status |
Complete
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BEI Status |
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NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
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Isolate Suggestion Source |
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HMP Isolation Body Sample Site |
Blood
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HMP Isolation Body Sample Subsite |
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HMP Finishing Goal |
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Source, Sample & Medical Relevance Comments |
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Isolate Availability Comments |
Kimberlee Musser
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Project Comments |
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DNA Received |
Yes
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Date DNA Received |
2011-02-03
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Date Sequencing Begins |
2010-12-20
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Date Draft Sequencing Completed |
2011-03-18
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Cross Reference ID |
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