Studies
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38,678 |
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Biosamples
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80,365 |
|
Sequencing Projects
|
301,141 |
|
Analysis Projects
|
244,087 |
| Organisms | 362,266 |
| PROJECT INFORMATION | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0005695
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Project Name
|
Aerococcus urinae ACS-120-V-Col10a
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Other Names
|
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Legacy ER Project ID
|
15691
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Legacy GOLD ID
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Gi05138, Gc01697
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| NCBI BioProject Name | Aerococcus urinae ACS-120-V-Col10a | ||||||||||||||||
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NCBI BioProject ID
|
51073 |
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NCBI BioProject Accession
|
PRJNA51073 |
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NCBI Locus Tag
|
HMPREF9243
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NCBI BioSample Accession
|
SAMN00100756 |
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| PI | Dodson R. | ||||||||||||||||
| Added By |
Nikos Kyrpides
on 2009-09-05 |
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| Last Modified By |
Supratim Mukherjee
on 2017-10-18 |
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| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Human Microbiome Project (HMP) Medical |
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Sequencing Center
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J. Craig Venter Institute (JCVI)
(USA)
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Collaborating Institute
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Funding Agency
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NIH
(USA)
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Project Description
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Urinary tract pathogen according to the authors.Has been recovered in haemocultures and may induce endocarditis
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| Is JGI Project |
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Project Information Visibility
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Public | ||||||||||||||||
| PROJECT TYPE | |||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||
| Study |
Human Microbiome Project (HMP) Reference Genomes |
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| Organism |
Aerococcus urinae ACS-120-V-Col10a |
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| Analysis Projects |
Aerococcus urinae ACS-120-V-Col10a |
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| Number of Analysis Projects |
1 |
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| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
454 GS FLX Titanium |
|
Library Method
(MIGS-28)
|
|
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Number Of Reads
|
288882
|
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Read Size
|
|
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Vector
|
|
| GC Percent |
42
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0005695 |
| Organism Name |
Aerococcus urinae ACS-120-V-Col10a
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Aerococcus
|
| Genus Synonyms |
|
| Species |
Aerococcus urinae
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| Subspecies |
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| Species Synonyms |
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| Strain |
ACS-120-V-Col10a
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
CCUG 59500
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
866775 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Lactobacillales
|
| NCBI Family |
Aerococcaceae
|
| NCBI Genus |
Aerococcus
|
| NCBI Species |
Aerococcus urinae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Reproductive system
|
| Ecosystem Subtype |
Vagina
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Coccus-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
37
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Pairs |
| Diseases |
|
| Known Habitats |
Host Human vaginal microflora |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| HMP METADATA | |
|---|---|
| HMP ID |
9243
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Urogenital tract
|
| HMP Isolation Body Sample Subsite |
Vaginal
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
Ghent university
|
| Project Comments |
|
| DNA Received |
Yes
|
| Date DNA Received |
2010-02-04
|
| Date Sequencing Begins |
2010-05-26
|
| Date Draft Sequencing Completed |
2010-07-20
|
| Cross Reference ID |
|
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