PROJECT INFORMATION | |
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GOLD Project ID
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Gp0005695
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Project Name
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Aerococcus urinae ACS-120-V-Col10a
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Other Names
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Legacy ER Project ID
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15691
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Legacy GOLD ID
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Gi05138, Gc01697
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NCBI BioProject Name | Aerococcus urinae ACS-120-V-Col10a |
NCBI BioProject ID
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51073 |
NCBI BioProject Accession
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PRJNA51073 |
NCBI Locus Tag
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HMPREF9243
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NCBI BioSample Accession
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SAMN00100756 |
PI | Dodson R. |
Added By |
Nikos Kyrpides
on 2009-09-05 |
Last Modified By |
Supratim Mukherjee
on 2017-10-18 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Human Microbiome Project (HMP) Medical |
Sequencing Center
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J. Craig Venter Institute (JCVI)
(USA)
|
Collaborating Institute
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|
Funding Agency
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NIH
(USA)
|
Project Description
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Urinary tract pathogen according to the authors.Has been recovered in haemocultures and may induce endocarditis
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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Database
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Genome Publications
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Other Publications
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PROJECT COMPOSITION | |
Study |
Human Microbiome Project (HMP) Reference Genomes |
Organism |
Aerococcus urinae ACS-120-V-Col10a |
Analysis Projects |
Aerococcus urinae ACS-120-V-Col10a |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Sequencing Comments
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Sequencing Technology
(MIGS-29)
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454 GS FLX Titanium |
Library Method
(MIGS-28)
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Number Of Reads
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288882
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Read Size
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Vector
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GC Percent |
42
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0005695 |
Organism Name |
Aerococcus urinae ACS-120-V-Col10a
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
FIRMICUTES
|
Genus |
Aerococcus
|
Genus Synonyms |
|
Species |
Aerococcus urinae
|
Subspecies |
|
Species Synonyms |
|
Strain |
ACS-120-V-Col10a
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
CCUG 59500
|
Type Strain |
Unknown
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
866775 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Firmicutes
|
NCBI Class |
Bacilli
|
NCBI Order |
Lactobacillales
|
NCBI Family |
Aerococcaceae
|
NCBI Genus |
Aerococcus
|
NCBI Species |
Aerococcus urinae
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Reproductive system
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Ecosystem Subtype |
Vagina
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Coccus-shaped
|
Motility |
Nonmotile
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Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
37
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
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Cell Arrangements |
Pairs |
Diseases |
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Known Habitats |
Host Human vaginal microflora |
Metabolisms |
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Phenotypes |
|
Energy Sources |
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HMP METADATA | |
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HMP ID |
9243
|
Show in DACC? |
Yes
|
HMP Project Status |
Complete
|
BEI Status |
|
NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
Isolate Suggestion Source |
|
HMP Isolation Body Sample Site |
Urogenital tract
|
HMP Isolation Body Sample Subsite |
Vaginal
|
HMP Finishing Goal |
|
Source, Sample & Medical Relevance Comments |
|
Isolate Availability Comments |
Ghent university
|
Project Comments |
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DNA Received |
Yes
|
Date DNA Received |
2010-02-04
|
Date Sequencing Begins |
2010-05-26
|
Date Draft Sequencing Completed |
2010-07-20
|
Cross Reference ID |
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