| PROJECT NAME | |
|---|---|
GOLD Project ID
|
Gp0005695
|
|
Project Name
|
Aerococcus urinae ACS-120-V-Col10a
|
|
Other Names
|
|
|
Legacy ER Project ID
|
15691
|
|
Legacy GOLD ID
|
Gi05138, Gc01697
|
| NCBI BioProject Name | Aerococcus urinae ACS-120-V-Col10a |
|
NCBI BioProject ID
|
51073 |
|
NCBI BioProject Accession
|
PRJNA51073 |
|
NCBI Locus Tag
|
HMPREF9243
|
|
NCBI BioSample Accession
|
|
| PI | Dodson R. |
| Added By |
Nikos Kyrpides
on 2009-09-05 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| PROJECT INFORMATION | |
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Human Microbiome Project (HMP) Medical |
|
Sequencing Center
|
J. Craig Venter Institute (JCVI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
NIH
(USA)
|
|
Project Description
|
Urinary tract pathogen according to the authors.Has been recovered in haemocultures and may induce endocarditis
|
|
Project Information Visibility
|
Public
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
HMP |
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Human Microbiome Project (HMP) Reference Genomes |
| Analysis Projects |
Aerococcus urinae ACS-120-V-Col10a |
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
|
Sequencing Quality
(MIGS-31)
|
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
454-GS-FLX-Titanium |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
288882
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
42
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0005695 |
| Organism Name |
Aerococcus urinae ACS-120-V-Col10a
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
FIRMICUTES
|
| Genus |
Aerococcus
|
| Genus Synonyms |
|
| Species |
Aerococcus urinae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ACS-120-V-Col10a
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
CCUG 59500
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
866775 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Firmicutes
|
| NCBI Class |
Bacilli
|
| NCBI Order |
Lactobacillales
|
| NCBI Family |
Aerococcaceae
|
| NCBI Genus |
Aerococcus
|
| NCBI Species |
Aerococcus urinae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Reproductive system
|
| Ecosystem Subtype |
Vagina
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| Synonym List |
|
| GENERAL PROPERTIES | |||||
|---|---|---|---|---|---|
| Oxygen Requirement |
Anaerobe
|
||||
| Cell Shape |
Coccus-shaped
|
||||
| Motility |
Nonmotile
|
||||
| Sporulation |
Nonsporulating
|
||||
| Temperature Range |
Mesophile
|
||||
| Temperature Optimum |
37
|
||||
| Salinity |
|
||||
| pH |
|
||||
| Cell Diameter |
|
||||
| Cell Length |
|
||||
| Color |
|
||||
| Gram Staining |
Gram+
|
||||
| Biotic Relationships |
|
||||
| Symbiotic Physical Interaction |
|
||||
| Symbiotic Relationship |
|
||||
| Symbiont Name |
|
||||
| Symbiont Taxon ID |
|
||||
| Cell Arrangements |
Pairs |
||||
| Diseases |
|
||||
| Known Habitats |
Host Human vaginal microflora |
||||
| Metabolisms |
|
||||
| Phenotypes |
|
||||
| Energy Sources |
|
||||
| HMP METADATA | |
|---|---|
| HMP ID |
9243
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Urogenital tract
|
| HMP Isolation Body Sample Subsite |
Vaginal
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
Ghent university
|
| Project Comments |
|
| DNA Received |
Yes
|
| Date DNA Received |
2010-02-04
|
| Date Sequencing Begins |
2010-05-26
|
| Date Draft Sequencing Completed |
2010-07-20
|
| Cross Reference ID |
|
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