PROJECT NAME
GOLD Project ID
Gp0005674  
Project Name
Anaerococcus prevotii PC 1, DSM 20548  
Other Names
  
Legacy ER Project ID
11072  
Legacy GOLD ID
Gi02318, Gc01089  
NCBI BioProject Name Anaerococcus prevotii DSM 20548
NCBI BioProject ID 29533
NCBI BioProject Accession
PRJNA29533  
NCBI Locus Tag
Apre  
NCBI BioSample Accession
SAMN00001908  
PI Jonathan Eisen
Added By GEBA on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-03-26 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Normal microflora of human and animals  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications Standards in genomic sciences 1(2):159-65 Complete genome sequence of Anaerococcus prevotii type strain (PC1).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Anaerococcus prevotii PC 1, DSM 20548
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Illumina
Sanger
Library Method (MIGS-28)
8Kb, Fosmid, 454  
Number Of Reads
18,576 Sanger and 464,157 Roche/454 reads  
Read Size
  
Vector
pMCL200, pcc1Fos, 454  
GC Percent
36  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0005674
Organism Name
Anaerococcus prevotii PC 1, DSM 20548  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Anaerococcus  
Genus Synonyms
  
Species
Anaerococcus prevotii  
Subspecies
  
Species Synonyms
  
Strain
PC 1, DSM 20548  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20548  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4311  
Exemplar Name
Anaerococcus prevotii  
Taxon DOI
10.1601/tx.4192  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525919
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Tissierellia  
NCBI Order
Tissierellales  
NCBI Family
Peptoniphilaceae  
NCBI Genus
Anaerococcus  
NCBI Species
Anaerococcus prevotii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 268136
Genbank 16S ID AF542232
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
0.6 - 0.9 um  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Diseases Opportunistic infection
Known Habitats Host
Human
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?