PROJECT NAME
GOLD Project ID
Gp0005667  
Project Name
Gardnerella vaginalis AMD  
Other Names
  
Legacy ER Project ID
15974  
Legacy GOLD ID
Gi05398  
NCBI BioProject Name Gardnerella vaginalis AMD
NCBI BioProject ID 40893
NCBI BioProject Accession
PRJNA40893  
NCBI Locus Tag
GVAMD  
NCBI BioSample Accession
SAMN02472072  
PI Kimberly K Jefferson
Added By Nikos Kyrpides on 2009-10-12 00:00:00.0
Last Modified By Auto script update processes on 2014-10-31 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Pathogen
Medical
Sequencing Center
  
Collaborating Institute Virginia Commonwealth University (USA)
Funding Agency
  
Project Description
The most prevalent sexually transmitted organism and associated with bacterial vaginosis.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications BMC genomics 11(375):375 Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Gardnerella vaginalis sequencing - Virginia Commonwealth University
Analysis Projects Gardnerella vaginalis AMD
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005667
Organism Name
Gardnerella vaginalis AMD  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Gardnerella  
Genus Synonyms
  
Species
Gardnerella vaginalis  
Subspecies
  
Species Synonyms
  
Strain
AMD  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 682147
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Gardnerella  
NCBI Species
Gardnerella vaginalis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Reproductive system  
Ecosystem Subtype
Vagina  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Bacterial vaginosis
Known Habitats Host
Vagina
Metabolisms
  
Phenotypes Fastidious
Energy Sources
  

 

 

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