PROJECT NAME
GOLD Project ID
Gp0005568  
Project Name
Haloferax mediterranei R-4  
Other Names
  
Legacy ER Project ID
15069  
Legacy GOLD ID
Gi04563  
NCBI BioProject Name Haloferax mediterranei ATCC 33500
NCBI BioProject ID 39645
NCBI BioProject Accession
PRJNA39645  
NCBI Locus Tag
HaMed  
NCBI BioSample Accession
  
PI
Added By Nikos Kyrpides on 2009-07-27 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Biotechnological
Sequencing Center
  
Collaborating Institute San Diego State University (USA)
Funding Agency
  
Project Description
Haloferax mediterranei ATCC 33500 genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Information
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Haloferax mediterranei R-4, ATCC 33500
Analysis Projects Haloferax mediterranei R-4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0089964
Organism Name
Haloferax mediterranei R-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Haloferax  
Genus Synonyms
  
Species
Haloferax mediterranei  
Subspecies
  
Species Synonyms
  
Strain
R-4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33500  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.279  
Exemplar Name
Haloferax mediterranei  
Taxon DOI
10.1601/tx.311  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 523841
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Haloferacales  
NCBI Family
Haloferacaceae  
NCBI Genus
Haloferax  
NCBI Species
Haloferax mediterranei  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Salt crystallizer ponds  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D11107
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Disc-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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